Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2172 188 5e-42 seq3337 165 6e-35 seq3420 140 2e-27 seq2611 107 1e-17 seq3332 104 2e-16 >seq2172 Length=48972 Score = 188 bits (208), Expect = 5e-42 Identities = 254/348 (73%), Gaps = 7/348 (2%) Strand=Plus/Plus Query 518010 ATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGC 518067 ||||| ||||| |||||||||||| || |||||||| | ||| | || | || | Sbjct 14509 ATGTTCAACAAGCAAATTATCAAAATCCTCTCCTCCCAAATGAGTGTCACCAGCTGTTGA 14568 Query 518068 TCTTACTTGGAA--AAGT-CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACC 518124 | | |||| || ||| || || ||| | ||||| || ||||| || ||||| Sbjct 14569 TTTAACTTCAAACAAAGAACCCTCAGCAATTGCCAAAACAGAAACATCGAAAGTACCACC 14628 Query 518125 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACG 518183 ||| | ||||||||||| | |||| || ||| ||| ||||| | ||||| | Sbjct 14629 ACCAAGGTCAAAAATAAGAATATTCTGATCCCC-TCTCATTTTCTTATCCAATCCATAAG 14687 Query 518184 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 518243 | ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | Sbjct 14688 CCAAAGCAGCAGCCGTTGGTTCATTAATAATTCGCAAAACATTAAGACCAGCAATCTGAC 14747 Query 518244 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 518303 | ||||||||||| ||||| | || ||| |||||||||||||||||||||| || | Sbjct 14748 CCGCATCTTTAGTTGCTTGACGCTGCCCATCATTAAAATATGCAGGAACAGTAACTACAG 14807 Query 518304 CATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTT 518351 ||||| ||| | |||| |||||| | ||||||||| ||| Sbjct 14808 CATCACGAACTGGATGTCCAAGATAAGCTTCAGATGTTTGTTTCCTTT 14855 Score = 87.8 bits (96), Expect = 1e-11 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 517376 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 517435 ||||| || || ||| ||||| ||| ||| |||||||| | | ||||| || ||| Sbjct 13501 TTAGTTAAAGCTCTTTCTCCCTCATAAACTTGAATAGTAACAGCTGGCTGATTGTCAGAA 13560 Query 517436 TAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 ||||| ||||| | ||| | || ||||| || | || | |||| || || Sbjct 13561 TAAGTAGTAAAGGTTTGGGAAGTCTTGTGGGGAATAGTAGCATTGCGTTCAACAAGTTTC 13620 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 517553 ||||||| ||| || || ||||| | ||| | |||||||||||| || ||||| |||| Sbjct 13621 GTCATAACACCCCCAGCGGTTTCAATACCCAAAGAAAGAGGAGTAACGTCAACGAGGA 13678 >seq3337 Length=92621 Score = 165 bits (182), Expect = 6e-35 Identities = 211/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 518021 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 518080 ||||| |||||||||||||| || | | ||||| ||| | || | | | || | ||| Sbjct 80333 CGATTGTCAAAATCTTCACCACCAAGATGAGTATCTCCAGCAGTTGATTTGACCTCAAAA 80274 Query 518081 AGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATA 518140 | ||||||||||| || || || || || ||| ||| || || |||| |||||| || Sbjct 80273 ATTCCATCTTCAATAGTCAGAATAGAAACGTCAAAGGTCCCGCCGCCCAAATCAAATATC 80214 Query 518141 AGTACATTCATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 518198 || || ||| ||| ||| | || ||||| | ||||| |||| |||||| || | Sbjct 80213 AGGACGTTCCGCTCTCCTTGACCC--TTCTTATCCAAGCCATAAGCAATAGCAGCGGCGG 80156 Query 518199 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 518258 | ||||| || || |||| |||||||||||| |||| ||| |||| ||||| || || | Sbjct 80155 TCGGTTCGTTGATGATTCGCAAAACATTAAGCCCAGAGATTGTTCCAGCATCCTTGGTAG 80096 Query 518259 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 | |||| ||| |||||| || || ||||| || ||||| || ||||| Sbjct 80095 CCTGTCGTTGGCTATCGTTGAAGTAGGCAGGCACCGTAATTACTGCATC 80047 Score = 109 bits (120), Expect = 4e-18 Identities = 204/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 517589 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 517648 || ||||| || |||| |||||| ||||||||||||||||| || ||||| | | ||| | Sbjct 80850 AGGATAGCAGCCTGAACAGCAGCTCCATATGCAACAGCTTCGTCTGGATTGATACTTTTA 80791 Query 517649 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 517708 || || | || ||| ||| || | || | ||||| | || || ||||| |||| Sbjct 80790 TTGAGCTCCTTCCCAGAGAAGAAGTCGGACAAAAGTTTTTGAACTTTTGGAATTCGAGTC 80731 Query 517709 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 517768 ||||| ||||| | ||||| ||||| | || ||||| |||| ||| | ||| | | Sbjct 80730 GATCCACCAACAAGAACAATATCATGAATTTGCGATTTGTCCATTTTCGCATCGCGGATA 80671 Query 517769 ACTTTTTCAACGGGTTCAAGACCCGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTT 517827 || ||||| || || | | ||| | ||||| || | ||||| || || || Sbjct 80670 GACTTCTCAACCGGATCCATA-GTGCTGCGGAACAAATCAGCGCAAAGCTCCTCAAAACG 80612 Query 517828 AGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 ||| | ||| | || | ||||||| || || || | |||||||| |||||| Sbjct 80611 AGCACGAGTGATGTTGGTGTAGAAATCAATGCCATCAAAGAGAGAATCAATTTCAAT 80555 >seq3420 Length=116350 Score = 140 bits (154), Expect = 2e-27 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| ||||||||| || |||||||||||||| | || |||||| | ||||| Sbjct 6662 CCATAAGCAATAGCAGCAGCTGTCGGTTCATTAATAATACGCACAACATTCAAACCAGAG 6721 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| |||| |||||||| || ||||| | ||| | ||||||||| || || ||||| || Sbjct 6722 ATTGTTCCAGCATCTTTGGTAGCTTGACGTTGAGCATCGTTAAAGTAGGCGGGAACGGTT 6781 Query 518297 ATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTT 518356 | ||| |||| | ||||| | ||| | ||| || || ||| ||||| || | Sbjct 6782 ACAACAGCATGCTTAACTTCATGACCCAAATAGGCTTCGGCAATTTCCTTCATCTTTCCA 6841 Query 518357 AAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA 518401 | || ||||| ||| || | |||||| | | |||| || | |||| Sbjct 6842 AGAACCATTGCTGAGATCTCTTCTGGAGCAAATTGTTTAGTTTCA 6886 >seq2611 Length=17818 Score = 107 bits (118), Expect = 1e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 635437 TAAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGTCT 635496 || ||| || || ||| | || || ||||||||||| ||||| || ||| | ||||| | Sbjct 11663 TAGATGCACACTTATTCTAACGGAAGGAGATTCAGCCAAAACTTTGGCTGTTGCTGGTTT 11604 Query 635497 TAATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGT 635556 ||||||||| |||||| |||||| ||||| || ||| | ||||| ||||| ||||| Sbjct 11603 GGGTGTTATTGGCCGAGATTTTTATGGTGTTTTTCCTCTTCGTGGAAAGCTTTTAAATGT 11544 Query 635557 TAGGGATGCTAGTCCTAAA 635575 ||| ||||| | || |||| Sbjct 11543 TAGAGATGCAAATCATAAA 11525 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 634439 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 634498 |||||||||||||||||||| ||| ||| || | || ||||||| | || || Sbjct 12872 ATTTCTGTTTGGAATAATGGACGTGGAATTCCGGTTGTTATGCATAAAGTTGAAAAGATG 12813 Query 634499 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 634558 | |||||| |||||||||||| | | | || ||| |||| ||| || | |||||| Sbjct 12812 TATGTACCAGAAATGATTTTTGGGACATTACTTACCTCTTCTAACTACAATGACAACGAG 12753 Query 634559 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 634610 | || || ||||||| |||||||| ||| || ||| | | ||||||| Sbjct 12752 AAGAAGACAACTGGTGGTCGAAATGGTTATGGAGCCAAGTTGACCAATATTT 12701 >seq3332 Length=299365 Score = 104 bits (114), Expect = 2e-16 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 ||||| |||| || |||||||| |||||||| | || | |||||| ||||||||| Sbjct 216443 CCATAAGCAAGTGCTGCAGCAGTGGGTTCATTGACAACACGCAAAACTCGTAGACCAGCA 216502 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 ||| || ||||||||||| ||||| | ||| |||||||| || || |||||||| || Sbjct 216503 ATTTGACCAGCATCTTTAGTAGCTTGACGTTGAGAATCGTTGAAGTAGGCAGGAACGGTG 216562 Query 518297 ATAACGGCAT 518306 || || |||| Sbjct 216563 ATGACTGCAT 216572 Score = 98.7 bits (108), Expect = 8e-15 Identities = 130/181 (72%), Gaps = 12/181 (7%) Strand=Plus/Plus Query 517466 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCA 517525 ||||||||||| |||| |||||| || || | || |||||| ||||| | |||| Sbjct 215606 GGAATTGTTGTATTTCGTCCAATAAGCTTCGTGAAAACACCACCCAAAGTTTCAATACCA 215665 Query 517526 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 517585 |||||||| ||||| ||||| | ||| |||| | | || |||| |||| Sbjct 215666 AGAGAAAGTGGAGTAACATCGAGTAGAACAACCTCTGTAA------CATC------ACCA 215713 Query 517586 ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTT 517645 |||||| | || ||||| ||||| ||| |||||||||||||||||| || |||| | Sbjct 215714 GCAAGAACCCCAGCCTGAATCGCAGCTCCAATTGCAACAGCTTCATCAGGGTTGACAGCT 215773 Query 517646 T 517646 | Sbjct 215774 T 215774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780651199635700