Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq3420 178 2e-39 seq3337 167 3e-36 seq2172 141 1e-28 seq1894 96.9 4e-15 seq3048 89.7 7e-13 seq2448 84.2 3e-11 >seq3420 Length=116350 Score = 178 bits (196), Expect = 2e-39 Identities = 385/585 (66%), Gaps = 52/585 (9%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || | || || || ||||| || || || ||||||||||||||||| | | Sbjct 6650 TTCTTGTCCAATCCATAAGCAATAGCAGCAGCTGTCGGTTCATTAATAATACGCACAACA 6709 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 |||| |||| || ||| | |||||||| || ||||| ||||| | ||||||||||||| Sbjct 6710 TTCAAACCAGAGATTGTTCCAGCATCTTTGGTAGCTTGACGTTGAGCATCGTTAAAGTAG 6769 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || ||||| || || | | | |||| | ||| | ||| | ||| || || || Sbjct 6770 GCGGGAACGGTTACAACAGCATGCTTAACTTCATGACCCAAATAGGCTTCGGCAATTTCC 6829 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 ||||| || ||||||||| | ||| |||||||| | ||||| ||||| |||||||| Sbjct 6830 TTCATCTTTCCAAGAACCATTGCTGAGATCTCTTCTGGAGCAAATTGTTTAGTTTCACCA 6889 Query 7835 TTAAAATCAACTTCAATCATGGG----------TTTATCCGCAGCACC----------GG 7874 || | | ||| || ||| | |||||| ||| ||| || Sbjct 6890 TTGACGTTTGCTTTTAT-ATGTGGCTTATTTCCTTTATCGGCA--ACCTAAAAATTAGGG 6946 Query 7875 GGATAACCTT-----------------------------ATACGACCAATCTTTCATATC 7905 |||| || || | ||| |||| |||||||| Sbjct 6947 GGATGACATTTGATCCCAAAAGTAAACAAAAAATACCCCAAACGGCCAAAGCTTCATATC 7006 Query 7906 GTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGT 7965 ||||| || | ||||| || | |||||| || || || ||||| || || | ||| Sbjct 7007 ATCTTGCACAGTCTTGTCCGTGAATTCTCTTCCAATGAGGCGTTTTGCGTCGAAGATTGT 7066 Query 7966 GTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATT 8025 |||| ||||| | || |||||||| || ||||| || || | | ||| | | Sbjct 7067 ATTTTCCGGGTTGAGGGTCAACTGGTTCTTTGCAGCGTCTCCAATCAATCTTTCTCCACT 7126 Query 8026 TTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTC 8085 ||| || ||||| || || || || || | ||||| ||||||||||| || || ||||| Sbjct 7127 TTCAGTGAACGCAACATAGGAAGGAGTGATCCGATTTCCTTGGTCGTTGGCGATGATTTC 7186 Query 8086 TACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCC 8130 || || |||| | |||| || || || || || || ||||| Sbjct 7187 AACACGTCCGTTCTTGTAGACACCAACACAAGAGTAGGTCGTTCC 7231 >seq3337 Length=92621 Score = 167 bits (184), Expect = 3e-36 Identities = 562/887 (63%), Gaps = 95/887 (11%) Strand=Plus/Minus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | | ||| || || || || | || || ||||| || || || || || || Sbjct 80859 TCACCAGACAGGATAGCAGCCTGAACAGCAGCTCCATATGCAACAGCTTCGTCTGGATTG 80800 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || ||||||| || || || || || | || || || | || ||||| ||| || Sbjct 80799 ATACTTTTATTGAGCTCCTTCCCAGAGAAGAAGTCGGACAAAAGTTTTTGAACTTTTGGA 80740 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 ||||| ||||||||||| || | ||| || |||| | || |||||| || || || | Sbjct 80739 ATTCGAGTCGATCCACCAACAAGAACAATATCATGAATTTGCGATTTGTCCATTTTCGCA 80680 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || || | | || || || || |||||| | |||||||| || || || ||| Sbjct 80679 TCGCGGATAGACTTCTCAACCGGATCCATAGTGCTGCGGAACAAATCAGCGCAAAGCTCC 80620 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAAT- 7308 |||||||| ||||| || ||| || |||||||||| ||| || | | |||||||| Sbjct 80619 TCAAAACGAGCACGAGTGATGTTGGTGTAGAAATCAATGCCATCAAAGAGAGAATCAATT 80560 Query 7309 -------------TTCAATGGTTGTTTG-----------------------TGCC---GT 7329 ||||| | | ||| ||| || Sbjct 80559 TCAATGCTAAAAATTCAAAGAATTTTTCATAAAATAGATTTAAAAATACCTTGCTTGAGT 80500 Query 7330 CGAA---GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACG 7386 ||| ||||| || ||||| || |||||||| || || || | ||||||||| ||||| Sbjct 80499 AGAACTGGATAAAGTCCGCTTGGCACGCTCACATGCAGTACGAAGACGACGAAGCGCACG 80440 Query 7387 CGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTG------ 7440 || || | | ||| ||||||||||| || |||||||| || ||| || Sbjct 80439 TGGATTGGTAGCGAGATCCTTCTTATGTTTGCGCTTAAACTCGGCAACGAAATGATTAAC 80380 Query 7441 ---TCGAAGG------------------------AGTC-------TCGAAT--CGAAATC 7464 | || | | || |||| | | ||||| Sbjct 80379 CTTTAAAAAGTATTTTCAGTAATTTAAACATAAAAATCAAACCATTCGATTGTCAAAATC 80320 Query 7465 TTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAAT 7524 ||||||||| | || ||||| || || || | |||||| ||||| || || ||||||| Sbjct 80319 TTCACCACCAAGATGAGTATCTCCAGCAGTTGATTTGACCTCAAAAATTCCATCTTCAAT 80260 Query 7525 GTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATC 7584 | | | ||||| ||||| || || || |||| ||||| || || |||||| | Sbjct 80259 AGTCAGAATAGAAACGTCAAAGGTCCCGCCGCCCAAATCAAATATCAGGACGTTC----C 80204 Query 7585 GTCGTCTTTG----TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAA 7640 | || ||| |||||||| | || || || ||||| || || || ||||| || | Sbjct 80203 GCTCTCCTTGACCCTTCTTATCCAAGCCATAAGCAATAGCAGCGGCGGTCGGTTCGTTGA 80144 Query 7641 TAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGC 7699 | || || || ||| || || |||| || ||| | ||||| || || || |||||||| Sbjct 80143 TGATTCGCAAAACA-TTAAGCCCAGAGATTGTTCCAGCATCCTTGGTAGCCTGTCGTTGG 80085 Query 7700 GAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATAC 7759 |||||| |||||||| || ||||| | || || ||| | || | | || | | || Sbjct 80084 CTATCGTTGAAGTAGGCAGGCACCGTAATTACTGCATCCTTAACAGTTTGCCCCAAAAAC 80025 Query 7760 GATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTC 7806 | ||| || | || ||||| ||| | |||||| | |||| ||| Sbjct 80024 GCTTCAGCAGTCTCCTTCATCTTGACCAAAACCATAGCAGAAACCTC 79978 Score = 84.2 bits (92), Expect = 3e-11 Identities = 175/258 (68%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 6583 ATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAATCTCCCCTTATC 6642 ||| ||||| || || |||||||| || || || || || || | | || || || Sbjct 81417 ATATTTTTCTGCCTCCTGGACCATGCGCTCGATCTCATCCTTGGAAAGACGGCCTTTGTC 81358 Query 6643 ATTCGTAATCGTAATCTT-TTCGGATTTACCCGAGGCCTTATCTTCAGCACTTACATTCA 6701 |||||||| || ||||| ||| | ||| || | | || |||| ||| ||||| | Sbjct 81357 GTTCGTAATTGTGATCTTATTCTGCTTT-CCAGTCGATTTGTCTTGAGCTGAGACATTAA 81299 Query 6702 AAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGG 6761 ||| || ||||| |||| ||||| | || | |||||| || ||| | || || | Sbjct 81298 GAATGCCGTTTGCGTCAATGTCGAAGGTAACTTCAATTTGAGGAACACCACGAGGAGCTG 81239 Query 6762 CTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTCTTACGTT 6821 ||||| || | || ||||| | || | ||| | || ||| | | | || ||| | Sbjct 81238 GGGGAATGCCGCTCAACTCAAACTTGCCCAACAAATTATTGTCCTTAGTCATCGCACGCT 81179 Query 6822 CACCTTCATAGACTTTAA 6839 ||||||||||||| |||| Sbjct 81178 CACCTTCATAGACCTTAA 81161 >seq2172 Length=48972 Score = 141 bits (156), Expect = 1e-28 Identities = 207/287 (72%), Gaps = 7/287 (2%) Strand=Plus/Plus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 ||| ||||| || || ||||| || || || || || || | ||| |||||||| | | Sbjct 14527 ATCAAAATCCTCTCCTCCCAAATGAGTGTCACCAGCTGTTGATTTAACTTCAAACAAAGA 14586 Query 7516 TCCTTCAATGTTTAACAAC---GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 || ||| || ||| |||||||| || ||||||||||| ||||||||||| || Sbjct 14587 ACCCTCAGCAATTGCCAAAACAGAAACATCGAAAGTACCACCACCAAGGTCAAAAATAAG 14646 Query 7573 TACGTTCGTATCGTCGTCT-TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTG 7631 | ||| ||| | ||| | |||||||| | || || || | ||| || ||||||| Sbjct 14647 AATATTCTGATC-CCCTCTCATTTTCTTATCCAATCCATAAGCCAAAGCAGCAGCCGTTG 14705 Query 7632 GTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 ||||||||||||| || || ||| || || |||||||| |||||||||| || ||| Sbjct 14706 GTTCATTAATAATTCGCAAAACA-TTAAGACCAGCAATCTGACCCGCATCTTTAGTTGCT 14764 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 || || ||| ||| ||||| || || || || || || || || || Sbjct 14765 TGACGCTGCCCATCATTAAAATATGCAGGAACAGTAACTACAGCATC 14811 >seq1894 Length=37626 Score = 96.9 bits (106), Expect = 4e-15 Identities = 176/250 (70%), Gaps = 12/250 (5%) Strand=Plus/Minus Query 115267 TTTTCGATTGAAACGGCGTCTCTTATAATTTCTTCAATTGTATTTTGAGAT----GGTTT 115322 |||||||| ||| || ||| | || ||||||||||| | || | || ||||| Sbjct 18260 TTTTCGATATCAACAGCCTCTTTAATTATTTCTTCAAT---ACGTTCA-ATACTCGGTTT 18205 Query 115323 GTTTTTTAACATGTTGAATAATTCAACC-GCAAATTCTTGGTGCATACCTTCATCTCGAC 115381 ||| || || |||||| | || | ||| ||||| || | || | ||||||||| ||| Sbjct 18204 GTTATTCAA-ATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAG 18146 Query 115382 TTATGAGTTCATTACTAAAACATAAACCTGGAAGTAACCCTCTCTTTTTTAACCAAAAAA 115441 || | ||||||||| || || || | | || | || || |||||||||| Sbjct 18145 AAATTAATTCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAA 18086 Query 115442 TAGCACAAAAACTACCCGAGAAGAATATACCTTCAACACACGCAAAGGCTAATAA-ACGT 115500 | ||| |||||| || ||||| ||||| |||||||| | ||||| || ||||| |||| Sbjct 18085 TTGCAGCAAAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGC-AATAAGACGT 18027 Query 115501 TCAGCAAATG 115510 || |||||| Sbjct 18026 TCTCCAAATG 18017 >seq3048 Length=35267 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/115 (79%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 11444 TTTTCTTACCAATCGCATCAATTTCATCTATAAAGATAATACACGGTTGATTT-TCACGT 11502 ||||| | |||||||||||||| ||||| ||||||| ||||||||| |||||| | ||| Sbjct 1731 TTTTCGT-CCAATCGCATCAATCTCATCAATAAAGAGAATACACGG-TGATTTCTTCCGT 1788 Query 11503 GCCAATTCAAATATATCACGGACTCTTTTTGCGCCTACGCCTACAAACATTTCAA 11557 |||| ||| || ||||| | || | | || ||| || || |||||||| |||| Sbjct 1789 GCCATTTCGAACATATCTCTTACACGTCCTGGGCCAACACCAACAAACATCTCAA 1843 >seq2448 Length=24981 Score = 84.2 bits (92), Expect = 3e-11 Identities = 132/187 (71%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 22639 GGTGAAAACTTCGTGACACGAAAAATAACACTCGGTGTCGCTAATAT--CAGTGCAGGTA 22696 || |||| || || ||| ||||||||||| || || || || || || | | | Sbjct 15969 GGAGAAACTTTTGTAACAAGAAAAATAACAAGAGGAGTTGCAAAAATAGCACTCAA--TC 15912 Query 22697 AACAAAAATGTTTATACCTTGGTAACCTAGATGCGAAACGAGATTGGGGTCATGCACGCG 22756 ||||| ||| | | | | ||||| || |||| || |||||||| |||||||| | Sbjct 15911 AACAACAATTTATTGAATTAGGTAATATAAATGCTCGTCGTGATTGGGGGCATGCACGTG 15852 Query 22757 ATTACGTGAAATGTATGTGGAAAATATTACAACAAGATAAACCGGAAGATTTTGTTATTG 22816 | || || | |||||||| || |||||||| || |||| || ||||||||||||| Sbjct 15851 AATATGTTGAGGCTATGTGGATGATTTTACAACATAATGAACCTGATGATTTTGTTATTG 15792 Query 22817 CAACAGG 22823 | ||||| Sbjct 15791 CTACAGG 15785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635105409898000