Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1894 93.3 5e-14 seq3048 87.8 2e-12 >seq1894 Length=37626 Score = 93.3 bits (102), Expect = 5e-14 Identities = 171/246 (70%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 119411 CTTCTCGATCTCCACAGCTTCTTTCACGATGGAGTGAATAGTTTCTGTCGATGGTTTGTT 119470 ||| ||||| || ||||| ||||| | || | |||| ||| | |||||||| Sbjct 18261 CTTTTCGATATCAACAGCCTCTTTAATTATTTCTTCAATACGTTCAATACTCGGTTTGTT 18202 Query 119471 TCTCAAGAGTTTAAACAACTCTACG-GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGA 119529 |||| ||| || || | || ||||| || ||||||| |||||||| ||||| | Sbjct 18201 ATTCAAATGTTGGAA-AAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAA 18143 Query 119530 TGAGCTCATTACT--GAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 | | |||||||| | ||| ||||||||| || || | |||||| | |||||| || Sbjct 18142 TTAATTCATTACTTTGTGTCAA--TCCAGGCATAAGACCACGTTTCTTCAACCAAAAAAT 18085 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 ||| |||||||||||| || || || || || || | || || || | ||||| || Sbjct 18084 TGCAGCAAAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTC 18025 Query 119648 AGCAAA 119653 |||| Sbjct 18024 TCCAAA 18019 >seq3048 Length=35267 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742 || ||||||||||| || || | ||||||||| || |||||| |||||| | Sbjct 1744 GCATCAATCTCATCAATAAAGAGAATACACGGTGATTTCTTCCGTGCCATTTCGAACATA 1803 Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACAC 11802 || | |||||| | |||||||| || |||||||||| || | | | ||||| || Sbjct 1804 TCTCTTACACGTCCTGGGCCAACACCAACAAACATCTCAAGAAACTCCGAGCCAGAA-AC 1862 Query 11803 TG-AATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 | |||||||| ||||| | ||| || || | ||| ||||| | || || || || Sbjct 1863 GGTTATGAAGGGGACATTCGCCTCTCCTGCTGTAGCTTTGGCGAGCAATGTTTTGCCGGT 1922 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCC 11888 || || | ||||| ||| |||||||| Sbjct 1923 TCCTGGCGGACCAGTGAGGAGGGCGCC 1949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588950600410000