Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3048 107 2e-18 >seq3048 Length=35267 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTT-TCGCGGGCGATTTCAAAGAG 9430 ||||||||||||||||| |||| |||||| || |||||| | || || ||||| || | Sbjct 1744 GCATCAATCTCATCAATAAAGAGAATACACGG-TGATTTCTTCCGTGCCATTTCGAACAT 1802 Query 9431 ATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9490 ||| | || | | | ||| ||||||||||||||||| | ||| | | | | ||| Sbjct 1803 ATCTCTTACACGTCCTGGGCCAACACCAACAAACATCTCAAGAAACTCCGAGCCAGAAAC 1862 Query 9491 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 |||||||||||||| | || || || | ||| |||||| | || || || || Sbjct 1863 GGTTATGAAGGGGACATTCGCCTCTCCTGCTGTAGCTTTGGCGAGCAATGTTTTGCCGGT 1922 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCC 9578 |||||| ||| | ||||||||| ||| Sbjct 1923 TCCTGGCGGACCAGTGAGGAGGGCGCCC 1950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589955357078000