Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2855 122 2e-22 seq2860 116 8e-21 seq3097 109 1e-18 seq2352 102 2e-16 >seq2855 Length=35860 Score = 122 bits (134), Expect = 2e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194956 TGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGT 195015 ||||||||||| || || | |||| ||||| || | |||||| || |||||||| || Sbjct 31833 TGAATATTGTAGTCAGCCAACGTTCGACCATCCTCCAACTGCTTCCCGGCGAAGATGAGG 31892 Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 ||||| || ||||| || || || || || || || || || |||||| ||||| ||| Sbjct 31893 CGTTGCTGCTCTGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 31952 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 |||||||| ||||| || || || | |||||| || || | ||||| || || ||| Sbjct 31953 GTGTCCGACTGCTCCACATCCAGAGTGATCGTCTTCCCGGTGAGCGTTTTGACAAAGACT 32012 Query 195136 TGCAT 195140 ||||| Sbjct 32013 TGCAT 32017 >seq2860 Length=84313 Score = 116 bits (128), Expect = 8e-21 Identities = 176/261 (67%), Gaps = 41/261 (16%) Strand=Plus/Plus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 ||| | |||||| |||||||||||||| |||||||| || || || |||||||| |||| Sbjct 77448 GAGACGCAAAACGAGGTGAAGAGTGGATTCTTTTTGGATGTTATAGTCGGCAAGGGTTCG 77507 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGAT----AAGT---------------------- 195015 |||||||| ||||| ||||| |||||||| |||| Sbjct 77508 ACCATCTTCAAGCTGTTTACCAGCGAAGATCTTAAAGTTGAAATATCTCAATGACAAAGT 77567 Query 195016 ---------------CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGC 195060 || || || || || || || ||||||||||| || || || Sbjct 77568 AATCAACAAACCAGGCGCTGCTGATCAGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCT 77627 Query 195061 TTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAA 195120 |||||||| ||||| ||||| || ||||||||||||||| | |||||||| ||||| Sbjct 77628 TTGACGTTTTCAATAGTGTCTGATGCTTCCACTTCAAGGGTGATGGTCTTTCCCGTCAAT 77687 Query 195121 GTTTTTACGAACACTTGCATT 195141 || ||||| || | |||||| Sbjct 77688 GTCTTTACAAAAATCTGCATT 77708 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 195015 TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 ||| || || ||||||||||||||||| ||||||||||||||| ||| || || || || Sbjct 78401 TCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGAT 78460 Query 195075 GGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 || || ||| ||||||||||| || | ||||||||| || | ||| |||||||| | Sbjct 78461 AGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGAT 78520 Query 195135 TTGCAT 195140 ||||| Sbjct 78521 CTGCAT 78526 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || || || || ||||| || || |||||||||||||||||| ||||| ||||| || Sbjct 77855 CGCTGCTGATCCGGAGGGATCCCCTCTTTGTCTTGAATTTTTGCTTTGACATTCTCGATC 77914 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || || ||| ||||||||| ||||| | |||||||| || | ||||| || || | | Sbjct 77915 GTATCGGAAGCTTCCACTTCGAGGGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAGATT 77974 Query 195136 TGCAT 195140 ||||| Sbjct 77975 TGCAT 77979 Score = 87.8 bits (96), Expect = 4e-12 Identities = 168/260 (65%), Gaps = 46/260 (18%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||||||||| |||||||||||||| ||||| || || || || | ||||| Sbjct 77180 CAAGACCAAGTGAAGAGTAGACTCTTTTTGAATGTTGTAGTCAGCGAGCGTACGACCATC 77239 Query 194988 TTCGAGCTGCTTACCTGCGAAGAT------------------AAG--------------- 195014 ||||||||||| || |||||||| ||| Sbjct 77240 CTCGAGCTGCTTTCCAGCGAAGATCTAGAAATTTAGAGTTAAAAGATTTAATAAAATCAT 77299 Query 195015 -------------TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCT 195061 || ||||| ||||| ||||| ||||| ||||| |||||||| | Sbjct 77300 TAAAACAAACCAAACGCTGTTGATCTGGCGGAATACCTTCCTTGTCCTGAATTTTGGCTT 77359 Query 195062 TGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAG 195121 |||| || || || ||||| || || ||||| ||||| | ||||| ||||||| || Sbjct 77360 TGACATTTTCGATAGTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAG 77419 Query 195122 TTTTTACGAACACTTGCATT 195141 |||| || || | ||||||| Sbjct 77420 TTTTCACAAAGATTTGCATT 77439 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 195015 TCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT 195074 |||||| || || || ||||| ||||||||||||||||| || ||| ||||||||||| Sbjct 78126 TCGTTGCTGATCAGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTAACGTTCTCAAT 78185 Query 195075 GGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACAC 195134 |||||| ||| || ||||| || || | || || || || | || || ||||| | Sbjct 78186 GGTGTCGGAAGACTCAACTTCGAGCGTGATGGTTTTCCCAGTAAGCGTCTTGACGAAAAT 78245 Query 195135 TTGCAT 195140 ||||| Sbjct 78246 CTGCAT 78251 >seq3097 Length=162332 Score = 109 bits (120), Expect = 1e-18 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || ||||||||||| ||||| || || |||||||||||||| |||||| || |||||| Sbjct 137009 CGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATG 137068 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 ||||| ||| ||| |||||||| |||| ||| || || || ||||| || || || | Sbjct 137069 GTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAATC 137128 Query 195136 TGCAT 195140 ||||| Sbjct 137129 TGCAT 137133 >seq2352 Length=49960 Score = 102 bits (112), Expect = 2e-16 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || || || ||||| ||||||||||| |||||||||||||| ||||| |||||||| Sbjct 37632 CGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATA 37691 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 ||||| || || |||||||| || | |||||||| ||||||||||| || || | Sbjct 37692 GTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAAGATC 37751 Query 195136 TGCA 195139 |||| Sbjct 37752 TGCA 37755 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || |||||||| || || |||||||| |||||||| || || || ||| || |||||| Sbjct 38170 AGACGTTGTTGATCGGGTGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCA 38229 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAAC 195132 || |||||||| ||||||||||| || | |||||||| || | ||| || || || Sbjct 38230 ATAGTGTCCGAGGCCTCCACTTCAAGAGTGATAGTCTTTCCCGTGAGAGTCTTAACAAAA 38289 Query 195133 ACTTGCATT 195141 | ||||||| Sbjct 38290 ATTTGCATT 38298 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 195016 CGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATG 195075 || || ||||| || || || || || |||||||||||||| |||||| || |||||| Sbjct 38443 CGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATG 38502 Query 195076 GTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACT 195135 || || || ||| |||||||| || | |||||||| ||||| ||||| ||||| | Sbjct 38503 GTATCAGAGGCTTCAACTTCAAGAGTGATAGTCTTTCCAGTCAACGTTTTCACGAAGATC 38562 Query 195136 TGCAT 195140 ||||| Sbjct 38563 TGCAT 38567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109432557446150