Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1894 118 1e-21 seq1983 95.1 1e-14 >seq1894 Length=37626 Score = 118 bits (130), Expect = 1e-21 Identities = 278/423 (66%), Gaps = 39/423 (9%) Strand=Plus/Minus Query 18945 ATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 ||||| || | ||||| |||||||| | ||| || || || || | | || ||||| Sbjct 18195 ATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAATTC 18136 Query 19005 ATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAA 19064 |||| ||| || |||||||| || || | ||| || ||||| || || | |||||| Sbjct 18135 ATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGCAAA 18076 Query 19065 TGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACT 19124 |||||| || ||||| ||||| |||| ||||| |||| || | ||||||| | Sbjct 18075 ACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCAAATGA 18016 Query 19125 AGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTT--------------T 19170 ||| || ||| | | |||| || |||||||||||||| || Sbjct 18015 AGCTTCTTTACTGGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATAAAGTCAAA 17956 Query 19171 TTTACACATGGCATTG-----TCT----CT---ATAGA-----ATTAAATAGATACATA- 19212 || | | || || ||| ||| || | ||| ||| |||| || | | Sbjct 17955 TTCAAATATAGCGTTGAACAATCTTGCACTGAAAAAGAAAATTATTTAATAATTAAAAAA 17896 Query 19213 -------CGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || ||| || |||||||| ||| | ||| || ||| ||||||||||| Sbjct 17895 AGAGTACCGTTCAGTTGAATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGA 17836 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||||||||| || || || || ||||| || |||||||| | ||||||| ||| || || Sbjct 17835 ATGAATATTCTCAATGGCTATTTGAAAGCCATAAAAACAACGAGCTTCTGGTATTTGCAC 17776 Query 19326 TTC 19328 ||| Sbjct 17775 TTC 17773 >seq1983 Length=15124 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 48678 TCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA 48737 || ||||| || |||||| || | || |||||||||||||||| || || || ||| Sbjct 8475 TCAATATCAGTTTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCA 8416 Query 48738 ACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAG 48797 || | ||| ||| ||| |||||| || || ||| | ||||||||| |||||||| Sbjct 8415 ACTACTTTTCCATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAA 8356 Query 48798 TTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 |||| |||||| || ||||| ||||||| |||||| Sbjct 8355 GTGTAGTGAAAA-TCACGATCATAAATAATTACTGAATT 8318 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/288 (67%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 48353 TTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGAC 48412 |||||| ||||||||||| ||||| | || | ||| ||||| |||||| || | Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGAATTAAAAACTTGTAACATCGGTAT 9094 Query 48413 AATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACT 48472 ||| ||||| || | ||||| || || || || || ||| ||| | || | Sbjct 9093 AATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAATG 9034 Query 48473 AATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATC 48532 ||| |||| || || || || ||| ||| || || ||||| || |||| || || Sbjct 9033 AATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTTTC 8974 Query 48533 ATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGG 48592 | |||||||||| || ||| | | ||| | || ||||||| ||| | ||| || Sbjct 8973 AAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGTGG 8914 Query 48593 ATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCA 48640 | | || || | ||| ||||| |||||||| || ||| | ||||| Sbjct 8913 ACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCA 8866 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 48927 TTTTTTGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAGCATAATCT 48986 ||||||||||||||||| ||||| || | || ||||| ||||| | | |||||||||| Sbjct 8086 TTTTTTGTTTCTTTATGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAGAGCATAATCT 8027 Query 48987 GGATGAATTGTTGTACATGTACTAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTA 49046 || || | ||| ||| || | | | ||| ||||| || |||| || || ||| Sbjct 8026 GGGTGCACTGTAGTATTTGAAGCTGCCACTTCAGCTGCCAAATTATCCAACTCAACAGTT 7967 Query 49047 GTTACACCTGTATATATTCCT 49067 ||||| |||||||| || ||| Sbjct 7966 GTTACTCCTGTATAAATGCCT 7946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562084559058000