Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3420 145 6e-29 seq2172 138 9e-27 seq3332 122 7e-22 seq3337 109 4e-18 seq2611 95.1 1e-13 seq2938 89.7 4e-12 seq2860 86.0 5e-11 >seq3420 Length=116350 Score = 145 bits (160), Expect = 6e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGC 550368 |||||||||| | |||||| | || ||| | |||||| | || ||||| ||| || Sbjct 6880 TAAACAATTTGCTCCAGAAGAGATCTCAGCAATGGTTCTTGGAAAGATGAAGGAAATTGC 6821 Query 550369 CAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAA 550428 | || | | | ||||| ||||||| | |||| || |||| || || || || ||||| Sbjct 6820 CGAAGCCTATTTGGGTCATGAAGTTAAGCATGCTGTTGTAACCGTTCCCGCCTACTTTAA 6761 Query 550429 TGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCG 550488 || | |||||||||||||| |||||||||||| || |||| | |||||| | || Sbjct 6760 CGATGCTCAACGTCAAGCTACCAAAGATGCTGGAACAATCTCTGGTTTGAATGTTGTGCG 6701 Query 550489 TATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 |||||| |||||||| || |||||||| |||| |||||| | || || Sbjct 6700 TATTATTAATGAACCGACAGCTGCTGCTATTGCTTATGGATTGGACAA 6653 >seq2172 Length=48972 Score = 138 bits (152), Expect = 9e-27 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 550353 AAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTG 550412 ||| |||||||||| | |||| | |||| || |||| ||||| ||| | |||| Sbjct 14855 AAAGGAAACAAACATCTGAAGCTTATCTTGGACATCCAGTTCGTGATGCTGTAGTTACTG 14796 Query 550413 TACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTG 550472 | || |||||||||||||| || |||||||| ||||||||||| || | ||||||| Sbjct 14795 TTCCTGCATATTTTAATGATGGGCAGCGTCAAGCAACTAAAGATGCGGGTCAGATTGCTG 14736 Query 550473 GACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTG 550532 | ||||||||| | || ||||| |||||||| || |||||||| | || |||||| | | Sbjct 14735 GTCTTAATGTTTTGCGAATTATTAATGAACCAACGGCTGCTGCTTTGGCTTATGGATTGG 14676 Query 550533 ATAA 550536 |||| Sbjct 14675 ATAA 14672 Score = 102 bits (112), Expect = 7e-16 Identities = 136/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 552297 CTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAAT 552356 || || || ||||||||||| ||| | ||| | ||||| | ||| ||| ||||||| || Sbjct 13676 CTCGTTGACGTTACTCCTCTTTCTTTGGGTATTGAAACCGCTGGGGGTGTTATGACGAAA 13617 Query 552357 CTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCA 552416 ||| | || | ||| |||||||||| || | || | ||| |||| ||||| Sbjct 13616 CTTGTTGAACGCAATGCTACTATTCCCCACAAGACTTCCCAAACCTTTACTACTTATTCT 13557 Query 552417 GATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGAT 552476 || ||||| | |||||||| |||||| ||| ||| ||||||||| || ||||| | | Sbjct 13556 GACAATCAGCCAGCTGTTACTATTCAAGTTTATGAGGGAGAAAGAGCTTTAACTAAGGTT 13497 Query 552477 AATAATCAA 552485 |||| || Sbjct 13496 TTTAATTAA 13488 Score = 102 bits (112), Expect = 7e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 361706 CCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCT 361765 |||||||| || | |||||| |||||||| ||||| ||| | |||||| || || || Sbjct 14681 CCATAAGCCAAAGCAGCAGCCGTTGGTTCATTAATAATTCGCAAAACATTAAGACCAGCA 14740 Query 361766 ATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTA 361825 || | |||||| ||| |||||||| || |||||||||||||||||||||||||| Sbjct 14741 ATCTGACCCGCATCTTTAGTTGCTTGACGCTGCCCATCATTAAAATATGCAGGAACAGTA 14800 Query 361826 A 361826 | Sbjct 14801 A 14801 Score = 93.3 bits (102), Expect = 3e-13 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 550049 AAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTC 550108 || || || |||||||||||||||||||| || | ||||||||||||| ||| | || Sbjct 15395 AAGGTAGAGATTATTGCCAATGATCAAGGCAATAAAACTACTCCATCTGTAGTTGCCTTT 15336 Query 550109 ACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || || ||||||| |||| |||| ||| | |||||| |||| Sbjct 15335 ACTGACACTGAACGTTTAATTGGAGATCCTGCAAAAGATCA 15295 >seq3332 Length=299365 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| || || || || || || || || || || |||||||||||||||||||||| Sbjct 216572 ATGCAGTCATCACCGTTCCTGCCTACTTCAACGATTCTCAACGTCAAGCTACTAAAGATG 216513 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| | |||||||| || ||| | ||| || |||||||||| |||||||| |||| Sbjct 216512 CTGGTCAAATTGCTGGTCTACGAGTTTTGCGTGTTGTCAATGAACCCACTGCTGCAGCAC 216453 Query 550518 TTGCATATGGACTTGAT 550534 |||| |||||| | ||| Sbjct 216452 TTGCTTATGGATTGGAT 216436 Score = 91.5 bits (100), Expect = 1e-12 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 ||||||||||| || || ||||| ||||| ||| ||||||||||||| ||||| || || Sbjct 215441 GGTATTCCTCCAGCACCACGTGGTGTACCTCAAGTTGAAGTTACTTTTGATATTGACGCA 215382 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGAT 552596 ||||| ||| | ||||| ||||| ||||| Sbjct 215381 AATGGTATTGTTAATGTTTCTGCTCGTGAT 215352 >seq3337 Length=92621 Score = 109 bits (120), Expect = 4e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 550332 TTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAG 550391 |||| |||||||||| | || ||||| | || || || ||| | || ||| | Sbjct 79982 TTTCTGCTATGGTTTTGGTCAAGATGAAGGAGACTGCTGAAGCGTTTTTGGGGCAAACTG 80041 Query 550392 TTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTA 550451 ||| |||||||||||| || || || || || || || || ||||| || ||||| | Sbjct 80042 TTAAGGATGCAGTAATTACGGTGCCTGCCTACTTCAACGATAGCCAACGACAGGCTACCA 80101 Query 550452 AAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTG 550511 | ||||||||| || |||| ||||||||| | || || ||||| ||||| || || | Sbjct 80102 AGGATGCTGGAACAATCTCTGGGCTTAATGTTTTGCGAATCATCAACGAACCGACCGCCG 80161 Query 550512 CTGCACTTGCATATGGACTTGATAA 550536 |||| |||| ||||| | ||||| Sbjct 80162 CTGCTATTGCTTATGGCTTGGATAA 80186 Score = 91.5 bits (100), Expect = 1e-12 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | || || || ||||| || | ||||| ||||| |||||||||||||| || || Sbjct 80678 GATGCGAAAATGGACAAATCGCAAATTCATGATATTGTTCTTGTTGGTGGATCGACTCGA 80737 Query 552147 ATTCCTAAAATTCGCGAAATGTTAAGTTC--TTATTTCAATGGTAAAAAATTAAATGAAA 552204 ||||| ||| || | ||| || || | | ||| ||| || | | ||| ||| Sbjct 80738 ATTCCAAAAGTT--CAAAAACTTTTGTCCGACTTCTTCTCTGGGAAGGAGCTCAATAAAA 80795 Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 || | |||||||| || |||||||| ||||| || || |||| || ||||| || |||| Sbjct 80796 GTATCAATCCAGACGAAGCTGTTGCATATGGAGCTGCTGTTCAGGCTGCTATCCTGTCTG 80855 Query 552265 G 552265 | Sbjct 80856 G 80856 >seq2611 Length=17818 Score = 95.1 bits (104), Expect = 1e-13 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 429293 ACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAACATTT 429352 ||||| || | ||||| ||| ||||| || |||||| ||||||| ||||||||| Sbjct 11544 ACATTTAAAAGCTTTCCACGAAGAGGAAAAACACCATAAAAATCTCGGCCAATAACACCC 11603 Query 429353 AGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACATTTA 429412 | |||| | || |||||||| ||||||||||||||||| | ||||||||| ||| || Sbjct 11604 AAACCAGCAACAGCCAAAGTTTTGGCTGAATCTCCTTCCGTTAGAATAAGTGTGCATCTA 11663 >seq2938 Length=69215 Score = 89.7 bits (98), Expect = 4e-12 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 565182 CAATTTACTGATTTATGTGTATTACTAGGTTGTGATTATTGTGATAATATCAAAGGTATT 565241 ||||||| |||||||||| | ||||| |||||||||||||||| ||||| ||||| ||| Sbjct 5803 CAATTTATTGATTTATGTATTTTACTTGGTTGTGATTATTGTGGAAATATTAAAGGAATT 5862 Query 565242 GGACCTAAAACTGCTTATAAAATGATTAAACAAT 565275 || ||||||| || || | |||||||||| Sbjct 5863 GGTCCTAAAAAATCTGTAGAATTAATTAAACAAT 5896 >seq2860 Length=84313 Score = 86.0 bits (94), Expect = 5e-11 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 563341 AAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACT 563400 |||| | || |||||||||||| |||||||||||||| |||||||| || || || Sbjct 78118 AAAACCAATCGTTGCTGATCAGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTAACG 78177 Query 563401 GCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGTAACAGTTTTACCAGTAAGAGTTTT 563459 |||||| || || | || | | |||||| || | ||||| |||||||| || || Sbjct 78178 TTCTCAATGGTGTC-GGAAGACTCAACTTCGAGCGTGATGGTTTTCCCAGTAAGCGTCTT 78236 Query 563460 AACGAAAATTTGCATA 563475 |||||||| |||||| Sbjct 78237 GACGAAAATCTGCATA 78252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029113548440500