Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1894 120 4e-22 seq1463 100 3e-16 >seq1894 Length=37626 Score = 120 bits (132), Expect = 4e-22 Identities = 314/480 (65%), Gaps = 47/480 (10%) Strand=Plus/Minus Query 37107 ACAGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTA 37166 ||||| ||||||| ||| | ||||| ||| | | || | || |||| || Sbjct 18248 ACAGCCTCTTTAATTATTTCTTCAATACGTTCAATACTCGGTTTGTTATTCAAATGTTGG 18189 Query 37167 AACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAA 37226 || | |||||| |||||||| | ||| | ||||||||| | | || ||||||||| Sbjct 18188 AAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAATTCATTACTT 18129 Query 37227 AAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCA 37286 || ||||| ||||| | ||| | ||| || | |||||| ||||| |||||| |||| Sbjct 18128 TGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGCAAAACTTCCA 18069 Query 37287 GAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAA--- 37343 || || || || |||||||||| |||||||| | ||||||| || || |||| Sbjct 18068 GAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCAAA---TGAAGCT 18012 Query 37344 -CTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAA------CACATTC 37396 || || | | | |||| | |||||| |||||| || | || |||| Sbjct 18011 TCTTTACTG-GCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATAAAGTCAAATTC 17953 Query 37397 AATTGT----TTCAA-----TTGCTTTTAAGA-GAAAGtttttttCT------------- 37433 || | | || || |||| | || | |||| || ||| | Sbjct 17952 AAATATAGCGTTGAACAATCTTGCACTGAAAAAGAAAATTATTTAATAATTAAAAAAAGA 17893 Query 37434 -------TCACT---ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTG 37483 ||| | |||| | |||||||||||||||| | ||||||||| || || Sbjct 17892 GTACCGTTCAGTTGAATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATG 17833 Query 37484 AATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTGAACATC 37543 |||||| ||||| ||||| ||||| ||||||||||| | |||||| | || ||| || || Sbjct 17832 AATATTCTCAATGGCTATTTGAAAGCCATAAAAACAACGAGCTTCTGGTATTTGCACTTC 17773 >seq1463 Length=17567 Score = 100 bits (110), Expect = 3e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 153292 TTTTACATACAAAATTTTGGATAGTTGATAATAAACATGTATATATAGGAAGTGCTAATA 153351 |||| |||| ||| ||||||| ||||| || ||||| | ||| |||| |||||||| Sbjct 9055 TTTTGCATAGCAAACTTTGGATTGTTGACAACCAACATTTTTATTTAGGTTCTGCTAATA 9114 Query 153352 TGGATTGGAGATCACTAACTCAAGTAAAAGAATTAGGTATAACAATTTATAATAATTCTT 153411 |||||||| |||| ||||| |||| |||||||| || || ||| | ||| ||||| Sbjct 9115 TGGATTGGCAATCATTAACTGAAGTTAAAGAATTGGGAATTTTAATAAAAAATTGTTCTT 9174 Query 153412 GTATAGCTAATGAACTAACTAAAATATTTA 153441 || ||||| ||| | | ||||| |||| Sbjct 9175 GTCTAGCTTGGGAATTTAACAAAATTTTTA 9204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592291256338000