Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3097 120 2e-22 seq2860 120 2e-22 seq2352 120 2e-22 seq1807 107 2e-18 >seq3097 Length=162332 Score = 120 bits (132), Expect = 2e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| |||||||| || |||||||| || || || ||||||||||| || ||| |||| Sbjct 137005 CAAGCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTC 137064 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||||| | ||| |||||||| || | |||||||||||||||||| || ||||| Sbjct 137065 AATGGTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAA 137124 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 137125 AATCTGCAT 137133 >seq2860 Length=84313 Score = 120 bits (132), Expect = 2e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| ||||| || ||||||||||| || |||||||||||| || ||| |||| Sbjct 78398 CAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTC 78457 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||| ||||| | |||||||||||||||| ||| || ||||| | ||| ||||| || Sbjct 78458 GATAGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAA 78517 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 78518 GATCTGCAT 78526 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| |||||||| ||||| || || |||||||| ||| ||| |||| Sbjct 77310 CAAACGCTGTTGATCTGGCGGAATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTC 77369 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||||||||| | || ||||| || |||| || || || || | |||||| ||||| Sbjct 77370 GATAGTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAA 77429 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 77430 GATTTGCAT 77438 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 101345 CGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACA 101404 ||||| ||||| || || || |||||||| || || || || ||| || |||| | | Sbjct 77583 CGCTGCTGATCAGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTTTCAATA 77642 Query 101405 GTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATC 101464 ||||| || | |||||||||||| |||| || || || || || || |||||||| ||| Sbjct 77643 GTGTCTGATGCTTCCACTTCAAGGGTGATGGTCTTTCCCGTCAATGTCTTTACAAAAATC 77702 Query 101465 TGCAT 101469 ||||| Sbjct 77703 TGCAT 77707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||| ||||| || || || || ||||| |||||||||||| ||| ||| | || Sbjct 77851 CAAACGCTGCTGATCCGGAGGGATCCCCTCTTTGTCTTGAATTTTTGCTTTGACATTCTC 77910 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || || || | ||||||||| || |||| || || || || | ||||| ||||| Sbjct 77911 GATCGTATCGGAAGCTTCCACTTCGAGGGTGATGGTCTTTCCAGTAAGCGTTTTCACAAA 77970 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 77971 GATTTGCAT 77979 >seq2352 Length=49960 Score = 120 bits (132), Expect = 2e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 101335 AAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTAC 101394 ||| | ||| ||||| ||||| |||||||||||||| || ||||||||||| ||| || Sbjct 37622 AAAAACCAAGCGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGAC 37681 Query 101395 AATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTT 101454 | | || | ||||||||| | || ||||||||||||| || || || || |||||||| Sbjct 37682 ATTCTCAATAGTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTT 37741 Query 101455 TACAAATATCTGCA 101468 ||||| ||||||| Sbjct 37742 CACAAAGATCTGCA 37755 Score = 89.7 bits (98), Expect = 4e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 101344 ACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTAC 101403 |||||| || || |||||||| || ||||| || |||||||| || || |||| | Sbjct 37903 ACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCACGTTTTCAAT 37962 Query 101404 AGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATAT 101463 ||||| || | || ||||||||||||| || || ||||| ||||| || ||||| || Sbjct 37963 CGTGTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAACAAAAAT 38022 Query 101464 CTGCATGGTTACGCGAAGA 101482 ||||| | | |||||| Sbjct 38023 TTGCATTCCTCCACGAAGA 38041 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 || ||| ||||||||||| |||||||| ||||| || || || || || ||| | || Sbjct 38169 CAGACGTTGTTGATCGGGTGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTC 38228 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | |||||| || | |||||||||||||||| || || || || | ||| || ||||| Sbjct 38229 AATAGTGTCCGAGGCCTCCACTTCAAGAGTGATAGTCTTTCCCGTGAGAGTCTTAACAAA 38288 Query 101461 TATCTGCAT 101469 || ||||| Sbjct 38289 AATTTGCAT 38297 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||| ||||| || || ||||| || || || || ||||||||||| || ||| |||| Sbjct 38439 CAAGCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTC 38498 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | || ||||| | ||| ||||||||||||| || || || || || ||||| || || Sbjct 38499 AATGGTATCAGAGGCTTCAACTTCAAGAGTGATAGTCTTTCCAGTCAACGTTTTCACGAA 38558 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 38559 GATCTGCAT 38567 >seq1807 Length=32432 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 101341 CAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTC 101400 ||||||||||||||| ||||| ||||| || |||||||||||||| || ||| |||| Sbjct 21108 CAAACGCTGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACATTTTC 21049 Query 101401 TACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAA 101460 | ||| ||||| | || ||||| || || | ||||| ||||| | ||| || ||||| Sbjct 21048 AATAGTATCAGAAGCCTCAACTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGACAAA 20989 Query 101461 TATCTGCAT 101469 |||||||| Sbjct 20988 AATCTGCAT 20980 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 101227 AATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTG 101286 || ||| | ||| ||||| || | | |||||| || ||||||||||| ||||| || || Sbjct 21267 AAAATAATTGACCTTTCCACCGCGAAGACGTAAGACCAAATGAAGGGTGGATTCCTTCTG 21208 Query 101287 TATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATC 101341 || || ||||| || | ||||| |||| || | ||||||||| ||||| ||| Sbjct 21207 GATGTTATAATCAGCTAAAGTTCGCCCATCCTCAAGTTGCTTACCAGCAAAGATC 21153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396261737731650