Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2172 168 4e-36 seq3420 163 2e-34 seq3337 134 9e-26 seq3332 118 7e-21 seq2611 100 2e-15 seq2360 96.9 2e-14 seq1807 95.1 8e-14 seq3097 86.0 4e-11 seq2860 86.0 4e-11 >seq2172 Length=48972 Score = 168 bits (186), Expect = 4e-36 Identities = 152/189 (80%), Gaps = 4/189 (2%) Strand=Plus/Minus Query 474690 AAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTAC 474747 ||| ||||||||| | |||| ||||||||||| ||| |||||| ||| |||| Sbjct 14855 AAAGGAAACAAACATCTGAAGCT--TATCTTGGACATCCAGTTCGTGATGCTGTAGTTAC 14798 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 |||||| ||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 14797 TGTTCCTGCATATTTTAATGATGGGCAGCGTCAAGCAACTAAAGATGCGGGTCAGATTGC 14738 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCT 474867 |||||||||||||| || ||||||||||||||||| || || || | |||||||| | Sbjct 14737 TGGTCTTAATGTTTTGCGAATTATTAATGAACCAACGGCTGCTGCTTTGGCTTATGGATT 14678 Query 474868 TGATAAGAA 474876 |||||||| Sbjct 14677 GGATAAGAA 14669 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 290828 CCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAGACCTGCA 290887 ||||| | || | ||| || ||||||||||| ||||||| || |||| |||||| ||| Sbjct 14681 CCATAAGCCAAAGCAGCAGCCGTTGGTTCATTAATAATTCGCAAAACATTAAGACCAGCA 14740 Query 290888 ATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTA 290947 || | ||| |||| |||||| || || ||| ||||||||||||| ||||| || ||| Sbjct 14741 ATCTGACCCGCATCTTTAGTTGCTTGACGCTGCCCATCATTAAAATATGCAGGAACAGTA 14800 Query 290948 ATAACAGC 290955 | ||||| Sbjct 14801 ACTACAGC 14808 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 475880 CTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAAT 475939 || |||||||| ||||| ||||| || ||| ||||||| | ||| || ||||||| || Sbjct 13676 CTCGTTGACGTTACTCCTCTTTCTTTGGGTATTGAAACCGCTGGGGGTGTTATGACGAAA 13617 Query 475940 CTTATTGACAGAAATACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCT 475999 ||| |||| | ||| || |||| || ||| | || || ||| | ||||||||| Sbjct 13616 CTTGTTGAACGCAATGCTACTATTCCCCACAAGACTTCCCAAACCTTTACTACTTATTCT 13557 Query 476000 GATAATCAAACAACTGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAA 476055 || ||||| || |||| || || ||| | | ||| || |||||| || ||||| Sbjct 13556 GACAATCAGCCAGCTGTTACTATTCAAGTTTATGAGGGAGAAAGAGCTTTAACTAA 13501 Score = 87.8 bits (96), Expect = 1e-11 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 474386 AAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTT 474445 || ||||| || ||||||||||| ||||| |||| ||| || ||||| ||| | ||| Sbjct 15395 AAGGTAGAGATTATTGCCAATGATCAAGGCAATAAAACTACTCCATCTGTAGTTGCCTTT 15336 Query 474446 ACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCA 474486 ||||| ||||||| | | ||||||||| |||| ||| |||| Sbjct 15335 ACTGACACTGAACGTTTAATTGGAGATCCTGCAAAAGATCA 15295 Score = 86.0 bits (94), Expect = 4e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 476078 TTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTT 476137 ||| ||||| | || ||||| || || || |||| ||||| || ||||||||||||||| Sbjct 13433 TTTGATCTTTATGGCATTCCACCAGCCCCTCGAGGTGTTCCCCAGATTGAAGTTACTTTT 13374 Query 476138 GATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 ||| | |||| || || ||| | ||||| |||||| |||||||| Sbjct 13373 GATTTGGATGTTAACGGGATTTTGCATGTTTCTGCTTTGGATAAATC 13327 >seq3420 Length=116350 Score = 163 bits (180), Expect = 2e-34 Identities = 200/270 (74%), Gaps = 6/270 (2%) Strand=Plus/Minus Query 474610 TAAACCATATATAGAAGCAATACACG-CA--GGTGAAACTAAACAATTTTCACCGGAACA 474666 ||| ||| ||||| |||||| ||| || |||||||||||||||||| | || ||| | Sbjct 6916 TAAGCCACATATAAAAGCAA---ACGTCAATGGTGAAACTAAACAATTTGCTCCAGAAGA 6860 Query 474667 AATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGA 474726 || || |||||||| | | || ||||| ||| || | ||| | || || || Sbjct 6859 GATCTCAGCAATGGTTCTTGGAAAGATGAAGGAAATTGCCGAAGCCTATTTGGGTCATGA 6800 Query 474727 AGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAAC 474786 ||| | |||| || | || ||||| || || ||||| ||| ||||||||||||| || Sbjct 6799 AGTTAAGCATGCTGTTGTAACCGTTCCCGCCTACTTTAACGATGCTCAACGTCAAGCTAC 6740 Query 474787 TAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGC 474846 |||||||| |||| ||| | ||| | |||||| | ||||||||||||||||| ||||| Sbjct 6739 CAAAGATGCTGGAACAATCTCTGGTTTGAATGTTGTGCGTATTATTAATGAACCGACAGC 6680 Query 474847 AGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||||||||| | || ||||| Sbjct 6679 TGCTGCTATTGCTTATGGATTGGACAAGAA 6650 >seq3337 Length=92621 Score = 134 bits (148), Expect = 9e-26 Identities = 207/293 (71%), Gaps = 2/293 (1%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 ||||| |||||||||| ||||| || ||||||| | || || || | ||| | Sbjct 80556 TTGAAATTGATTCTCTCTTTGATGGCATTGATTTCTACACCAACATCACTCGTGCTCGTT 80615 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGT-TCTC 475666 |||| || |||| ||||| | || | | || || || || ||||| |||| | || Sbjct 80616 TTGAGGAGCTTTGCGCTGATTTGTTCCGCAGCACTATGGATCCGGTTGAG-AAGTCTATC 80674 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | ||| | |||||||| ||| | ||||| ||||||||||| || || || || Sbjct 80675 CGCGATGCGAAAATGGACAAATCGCAAATTCATGATATTGTTCTTGTTGGTGGATCGACT 80734 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGAA 475786 ||||||||||| | | || | | || | || ||| || || | ||| || Sbjct 80735 CGAATTCCAAAAGTTCAAAAACTTTTGTCCGACTTCTTCTCTGGGAAGGAGCTCAATAAA 80794 Query 475787 AGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT 475839 ||| | ||||| || |||||||||||||||||||||||||| || || ||||| Sbjct 80795 AGTATCAATCCAGACGAAGCTGTTGCATATGGAGCTGCTGTTCAGGCTGCTAT 80847 Score = 105 bits (116), Expect = 4e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 474669 TTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAG 474728 ||||| | |||||||| | ||| ||||| | || || | | | | || ||| | Sbjct 79982 TTTCTGCTATGGTTTTGGTCAAGATGAAGGAGACTGCTGAAGCGTTTTTGGGGCAAACTG 80041 Query 474729 TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTA 474788 | | |||||||||||||| || || || || || || ||| ||||| || || || | Sbjct 80042 TTAAGGATGCAGTAATTACGGTGCCTGCCTACTTCAACGATAGCCAACGACAGGCTACCA 80101 Query 474789 AAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAG 474848 | ||||| |||| ||| | || ||||||||||| || || || || ||||| || || | Sbjct 80102 AGGATGCTGGAACAATCTCTGGGCTTAATGTTTTGCGAATCATCAACGAACCGACCGCCG 80161 Query 474849 CCGCACTTGCTTATGGTCTTGATAAGAA 474876 | || |||||||||| | |||||||| Sbjct 80162 CTGCTATTGCTTATGGCTTGGATAAGAA 80189 >seq3332 Length=299365 Score = 118 bits (130), Expect = 7e-21 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || || ||||| || || || || ||||||||||||||||| |||||||||| Sbjct 216572 ATGCAGTCATCACCGTTCCTGCCTACTTCAACGATTCTCAACGTCAAGCTACTAAAGATG 216513 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || |||||| ||||| ||||| ||| || | |||||||| || || || |||| Sbjct 216512 CTGGTCAAATTGCTGGTCTACGAGTTTTGCGTGTTGTCAATGAACCCACTGCTGCAGCAC 216453 Query 474855 TTGCTTATGG 474864 |||||||||| Sbjct 216452 TTGCTTATGG 216443 Score = 109 bits (120), Expect = 4e-18 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 ||||||||||| || || | || || |||||| |||||||||||||||||||||| ||| Sbjct 215441 GGTATTCCTCCAGCACCACGTGGTGTACCTCAAGTTGAAGTTACTTTTGATATTGACGCA 215382 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 ||||||||| |||||||| ||||| ||||| Sbjct 215381 AATGGTATTGTTAATGTTTCTGCTCGTGAT 215352 >seq2611 Length=17818 Score = 100 bits (110), Expect = 2e-15 Identities = 154/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 355393 TTGAGTTGTGTGAAGATATATCGTGCACTTGCATTATCTTTGCCTCCACTTAATCTTGTA 355452 |||||||| || || ||||| || | ||| |||||| ||||| ||| | ||| Sbjct 10165 TTGAGTTGAGTAAAAATATAACGAGGCGAAGCAGAATCTTTCCCTCCTTGTAAACGAGTA 10224 Query 355453 CCAAATTGACCATTGGGAAGTAATAAATTTATGTTGTTACTTCCAACATAATTTTGTGCC 355512 |||||||||||||| || | ||||| ||| || || ||| |||||| |||| || ||| Sbjct 10225 CCAAATTGACCATTTGGCATTAATAGATTGATATTATTAGAGCCAACAAAATTATGAGCC 10284 Query 355513 ATTTTTATTATAGTTTCAGTCATTGACTGTTCTCCATGATGATATTTAGTTCTTTTCGAA 355572 | || || || ||| | | ||| |||||||| ||||||||| | ||| | Sbjct 10285 AGATTCATAATTGTTGACATTAATGATTGTTCTCCGTGATGATATGCCGACATTTCACCA 10344 Query 355573 ACTGCACCTTGTAATTCAGATACTTTAATTTCTTCTTTAT 355612 || ||||| |||| | |||||| | ||||| ||||| Sbjct 10345 ACAGCACCAGCCAATTGTGCTACTTTGACTTCTTTTTTAT 10384 >seq2360 Length=23760 Score = 96.9 bits (106), Expect = 2e-14 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297442 ATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATTTAAC 297501 ||||||||||| | || ||||| || |||||||| ||| |||| || ||| |||| || Sbjct 16866 ATTGATCAAACTCGTGGATGGTTCTACACTTTATTGGTTATTTCAACTGCTCTATTCAAT 16925 Query 297502 AAACCAGCATTTAAAAATGTAATTGTTACAGGAATTGTTAACGCAGCTGATGGACAAAAA 297561 || |||| || ||| ||||| | || | || || | |||||| | ||| Sbjct 16926 CGTCCTCCATTCAAGAATTTAATTTGCAATGGTTTAGTATTAGCTTCAGATGGAAACAAA 16985 Query 297562 ATGTCAAAAAGTAAAGGTAATTATCCTGATCC-AAATATTTTGATGGATAAATATGGTGC 297620 ||||| ||||||||| ||||| || ||||| | | ||| | || |||||||| || Sbjct 16986 ATGTCTAAAAGTAAAAAGAATTACCCCGATCCTATGGAAATTG-TTGAGAAATATGGGGC 17044 Query 297621 AGATACTTTACGTCTTTATTTATTA 297645 |||| || | || ||||||||| || Sbjct 17045 AGATGCTCTTCGACTTTATTTAATA 17069 >seq1807 Length=32432 Score = 95.1 bits (104), Expect = 8e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 480647 ACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAAT 480706 ||| ||||||||||| || || || ||||| |||||||| || || ||| |||||| Sbjct 21105 ACGCTGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACATTTTCAAT 21046 Query 480707 AGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAA 480765 |||||||| | | || ||| || ||||||||||| |||||||||||||| || |||| Sbjct 21045 AGTATCAGAAGCCTCAA-CTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGACAAAAA 20987 Query 480766 TTTG 480769 | || Sbjct 20986 TCTG 20983 >seq3097 Length=162332 Score = 86.0 bits (94), Expect = 4e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 480648 CGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATA 480707 || ||||| || || ||||| || |||||||||||||| || |||||| |||||| Sbjct 137009 CGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATG 137068 Query 480708 GTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATT 480767 || |||| | | |||||| ||||| ||||| ||||| | ||||||||| ||||| Sbjct 137069 GTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAATC 137128 Query 480768 TG 480769 || Sbjct 137129 TG 137130 >seq2860 Length=84313 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 480647 ACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAAT 480706 ||| |||||||| || ||||| ||||||||||| ||||| || ||||||| ||| || Sbjct 77313 ACGCTGTTGATCTGGCGGAATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCGAT 77372 Query 480707 AGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAA 480765 ||| |||| || | || ||| ||||| ||||| || || || ||||| || || || | Sbjct 77373 AGTGTCAGATGCCTCAA-CTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAAGA 77431 Query 480766 TTTG 480769 |||| Sbjct 77432 TTTG 77435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268031212760600