Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq1983 86.0 3e-12 >seq1983 Length=15124 Score = 86.0 bits (94), Expect = 3e-12 Identities = 169/248 (68%), Gaps = 4/248 (2%) Strand=Plus/Minus Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 ||| ||||||| ||||| || | | |||| | ||| ||| ||||||| | ||| Sbjct 9117 ATTAAAAACTTGTAACATCGGTATAATTCCATTAGAATTTCCATTTGTGCCAGATATCAA 9058 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATA--CCGATTCCACCAGCCCATTTTGAA 26227 || || | | | ||| ||| ||| | | || ||||| |||||| |||||||| Sbjct 9057 AGAACCAGCAGCACGAATTGAATGA--ATGGAAAGTCCAATTCCTCCAGCCGATTTTGAA 9000 Query 26228 ATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCT 26287 ||| ||||||| || ||| || |||||||||| || ||||| |||| Sbjct 8999 ATATATGCACAACGATTAATTGTTTCAAAAATTCCTTCAATTGAGTCACCAACCATTGAA 8940 Query 26288 AATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTA 26347 | ||||||||||||||| | ||| | | | |||| || | ||| ||||| || || | | Sbjct 8939 AGTAAAAAACAAGAAGAAAGTTGTGGACGTTTTGTACCCGCATTGAATAAAGTTGGAGAA 8880 Query 26348 GCATGAGT 26355 || ||||| Sbjct 8879 GCGTGAGT 8872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253029360458750