Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_020844.1 Length=40695 Score E Sequences producing significant alignments: (Bits) Value seq299 120 8e-23 >seq299 Length=3019 Score = 120 bits (132), Expect = 8e-23 Identities = 585/912 (64%), Gaps = 44/912 (5%) Strand=Plus/Minus Query 13237 GAACAGACCATCGGCAACGACCAGATCATCATCCAGAAGTCCCGC-GTGGCTGAGTTCGG 13295 || ||||||||||||||| |||||| | |||| ||| | ||| | | | || || Sbjct 1294 GACCAGACCATCGGCAACATCCAGATGACCATCACCAAGGCGCGCCGCGTCCCGGTGCG- 1236 Query 13296 CTGGGTTGGCGAGAATCAGCGCGGTCTG---AACACTGGCCCCGGCTATAT-GTCGATCC 13351 |||| |||||| | || || ||| |||| ||| || |||| | ||| |||| Sbjct 1235 CTGGAATGGCGAAGAAAAGAAGGGGCTGGACAACAACGGCGCCAGCTACAACGTC-ATCC 1177 Query 13352 AGGCGGACCAGATCGCTCAGGCGATGCGGACCCTGACCAACGAGGTTGAAACGGACGTTG 13411 | |||||| |||| ||||| ||||| | ||| ||||||||| || | ||| | | Sbjct 1176 TGCGCGACCAGTTCGCCCAGGCCATGCGCGCGCTGGTCAACGAGGTCGAGTCCGACCTGG 1117 Query 13412 CTGTTGCCG--CCGCTGCGGGTGCGTCTCGTGCTGTTGGCACCGCCGGAACTACTCCGTT 13469 | | || | | | | || || || || ||| ||||||| || || ||||| Sbjct 1116 CCG----CGAACTACATCAAG-GCCTCCCGCGCCTGGGGCGCCGCCGGCACCACGCCGTT 1062 Query 13470 CAGCTCCGACATTGGCGGCGTGTCTCAGGCTCGCAAGACGCTGATCGACAACGGCGCTCC 13529 | | |||| | ||| | | |||| ||||| | ||| ||||||||||||||| Sbjct 1061 CGCCACCGATCTGAGCGACACCGCCCAGGTGCGCAAAATCCTGGCCGACAACGGCGCTCC 1002 Query 13530 GCCCATGGATCTCGGGCTGGTCATCAACTCCGACGCGGGCGCGAACCTGCGCACCCTGT- 13588 | | || || ||| || ||| || || || ||||| || ||||||| ||| Sbjct 1001 GATGAGCGACCTGCAGCTCGTGATCGACACCTCGGCCGGCGCCAAGATGCGCACGCTGAC 942 Query 13589 --ATGGCATCAAC----ACGGATCGG--GATTTCTCCCAGATGCCGTTTAGCCAACAGGG 13640 | || ||| ||| | ||| |||| ||| | | ||| ||| || Sbjct 941 CCAGCTCACCAAGGCCAACGAAGCGGCGGATTCCTCGCTGCTGC------GCCGC---GG 891 Query 13641 CGTACTGGTGACACCGCACGGCATGGCAATCCGTGAGACTGGCCAACCGGTCA-GCCATA 13699 ||| ||| || |||||| | || |||||||| | | || | ||| | | | Sbjct 890 CGTGCTGCTGGACGTGCACGGTTTCGCGATCCGTGAATCCGCGCA---GATCAAGACGTC 834 Query 13700 CGGCAGGCGATGCCGCAAGTGCG--ACCACTAACTCCGCTGGTTACGCAGTCGGCGCCAC 13757 ||||| | | | | | ||| || || ||| |||| || ||||| || || || || Sbjct 833 CGGCAAGGGCACCGGATCGGGCGCCACGACCAACACCGCGGGCTACGCGGTGGGTGCGAC 774 Query 13758 TGAGATCACCCTGGCCTCTGCCGGCACAGGTGAGATCAAGGACGGCGACGTTATCCAGTT 13817 |||||||||||| |||| ||||| || | ||| | ||||| || ||| || Sbjct 773 CACGATCACCCTGGCGGCTGCAGGCACCGGCACGGTCATCGCTGGCGATGTCATCACCTT 714 Query 13818 CGCGGGCGACAGCAACAAATACGTTGTTGTGAGCGGCGTGGCGGACGTGTCCAGCGGTGG 13877 ||| |||||| ||||| ||||| || | ||| | | ||| ||||| ||| || Sbjct 713 CGCTGGCGACGCGAACAAGTACGTGGTCGCCTCCGGTGACACCGACACGTCCAACGGCGG 654 Query 13878 AACCGTGACCATCCAAGAGCCCGGCCTCCAGGTGGCAAT--CGGCACCAGCGCAACGGAT 13935 || | ||| | | ||||||||| | ||| || |||| | ||| |||| Sbjct 653 CACGATCACCTTGGCGGCGCCCGGCCTGCGCCAGGCGATTCCGGCTGCGGCG--ACGGCG 596 Query 13936 ATCACCGTGGTCAGCGACTACGACGC-CAACGTGGCGTTCTATCGTCCAGCCATCCATCT 13994 |||||| | |||| || || |||| | ||| |||| ||| || |||||| || Sbjct 595 ATCACCATCGTCAACG-CTGCGACCCGGAACATGGCCTTCAGCCGCAACGCCATCGTCCT 537 Query 13995 TGTGACTCGCGCTCCGGCGCTGCCGCAAGAGGGTGACATGGCGGCTGACACAATGATGAT 14054 | ||| ||||| || ||||||||| || | |||||| ||| | ||| ||| || | Sbjct 536 GGCGACCCGCGCGCCCGCGCTGCCGGAACAAGGTGACTCGGCCGTCGACCGCATGTTGGT 477 Query 14055 GTCCGATCCGCGCTCCGGCTTGACTTTCGAGATTCGGGTTTATCCCGGCTATCGCAAAGT 14114 | ||||| |||||| |||| |||||||| | | || | | || ||| | || Sbjct 476 CACGGATCCCGTCTCCGGGCTGACCTTCGAGATCGCGATCTACCTCCAGTACCGCCAGGT 417 Query 14115 GCGGTACGAGGT 14126 || || |||||| Sbjct 416 GCAGTTCGAGGT 405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130097069867300