Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2448 107 3e-18 >seq2448 Length=24981 Score = 107 bits (118), Expect = 3e-18 Identities = 139/190 (73%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 47785 TTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCC 47844 |||||||| ||||||||||||||||||||||| | ||||| | || | |||||||||| Sbjct 15782 TTTCCTGTAGCAATAACAAAATCATCAGGTTCATTATGTTGTAAAATCATCCACATAGCC 15841 Query 47845 TCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATAAA 47904 || ||||| || | ||||| ||||| |||||| | |||| | ||| |||| | | | Sbjct 15842 TCAACATATTCACGTGCATGCCCCCAATCACGACGAGCATTTATATTACCTAATTCAATA 15901 Query 47905 CAGTCTTGCTTACCTTCAGAG--ATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAA 47962 | | ||| | | || || | ||| | | | ||||||| || || | ||||||| Sbjct 15902 AATTGTTGTTGA--TTGAGTGCTATTTTTGCAACTCCTCTTGTTATTTTTCTTGTTACAA 15959 Query 47963 AAGTTTCACC 47972 ||||||| || Sbjct 15960 AAGTTTCTCC 15969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665465700554000