Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3048 102 1e-16 seq1983 102 1e-16 >seq3048 Length=35267 Score = 102 bits (112), Expect = 1e-16 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 175294 GGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCG 175353 |||||||| ||| | ||| |||||| || || || || | |||||| ||| | || Sbjct 1949 GGCGCCCTCCTCACTGGTCCGCCAGGAACCGGCAAAACATTGCTCGCCAAAGCTACAGCA 1890 Query 175354 GGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGT 175412 || || | |||||||| ||||| | || |||| | | | ||| | ||||||||||| Sbjct 1889 GGAGAGGCGAATGTCCCCTTCATAACCGTT-TCTGGCTCGGAGTTTCTTGAGATGTTTGT 1831 Query 175413 TGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGA-AAATCAACCAT 175471 |||||| || | | | || | ||| | || ||||| || || | |||||| || | Sbjct 1830 TGGTGTTGGCCCAGGACGTGTAAGAGATATGTTCGAAATGGCACGGAAGAAATCA-CCGT 1772 Query 175472 GTATTGTCTTCATTGATGAGATTGATGCG 175500 ||||| |||| |||||||||||||||||| Sbjct 1771 GTATTCTCTTTATTGATGAGATTGATGCG 1743 >seq1983 Length=15124 Score = 102 bits (112), Expect = 1e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||||| ||| ||| |||| | || ||||| | ||||||||| | ||||| | Sbjct 10051 TTTGGAATCGTATAATCACTGCACAAATAGAAACTGGTATTCCATATATGGTCTACAAAG 10110 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 |||||||||| | || |||||| | ||||||||||| || || |||||||||||| Sbjct 10111 ATGCTTGTAATAGCAAATCAAACCAACAAAATTTGGGAACGATTAAATGCTCAAATCTTT 10170 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAA 76055 |||| |||||| | || || ||| || || |||| ||||||||||| |||| Sbjct 10171 GCACTGAAATTATTGAATATACATCACCTGAGGAAGTTTCTGTCTGCAATTTGGCTTCAA 10230 Query 76056 TCGC 76059 | || Sbjct 10231 TTGC 10234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596543872936000