Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1807 111 3e-19 seq2860 98.7 2e-15 >seq1807 Length=32432 Score = 111 bits (122), Expect = 3e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 193238 CTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGT 193297 |||||||||||| || || || || |||||||| ||||||| || | |||| |||||| Sbjct 21102 CTGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACATTTTCAATAGT 21043 Query 193298 ATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTG 193357 ||| |||| ||||||||| || || |||||||| || || || || || ||||| || || Sbjct 21042 ATCAGAAGCCTCAACTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGACAAAAATCTG 20983 Query 193358 CATTTT 193363 ||| || Sbjct 20982 CATATT 20977 >seq2860 Length=84313 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 193227 AAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATA 193286 |||| |||| || |||||||| || ||||||||||| ||||| || |||| || | Sbjct 78118 AAAACCAATCGTTGCTGATCAGGTGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTAACG 78177 Query 193287 TTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTT 193346 || ||| || ||||||||||||||||| || || || ||||| || || ||||| || Sbjct 78178 TTCTCAATGGTGTCGGAAGACTCAACTTCGAGCGTGATGGTTTTCCCAGTAAGCGTCTTG 78237 Query 193347 ACAAATATTTGCAT 193360 || || || ||||| Sbjct 78238 ACGAAAATCTGCAT 78251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899615602404000