Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq1894 93.3 8e-14 >seq1894 Length=37626 Score = 93.3 bits (102), Expect = 8e-14 Identities = 156/222 (70%), Gaps = 4/222 (2%) Strand=Plus/Minus Query 49820 TAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGT 49879 |||||| |||||||| ||| | ||| || || | ||| || ||||||||||| || Sbjct 18183 TAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAATTCATTACTTTGTGT 18124 Query 49880 TAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAA 49939 ||||| ||||| | || | || || | |||||| |||| |||||||| | ||| || Sbjct 18123 CAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGCAAAACTTCCAGAGAA 18064 Query 49940 GAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAA-TTTATCAT 49998 ||||| || || || | |||||||| || | | | |||||| || || || | Sbjct 18063 AAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCAA--ATGAAGCTTCTTTA 18006 Query 49999 CTAATA-TCCAATTTATAGCCCAATCTGCtttttttttGATA 50039 || | ||||| | ||||||||| || ||||| |||||| Sbjct 18005 CTGGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATA 17964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984436482907500