Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3282 91.5 4e-13 seq2498 89.7 2e-12 >seq3282 Length=184692 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 252570 CGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAA 252629 ||| || |||||||||||||| |||||||||||||| ||| ||||||| || || || Sbjct 15576 CGCTTGTTTTCCCATAGCACTTTGGTAAGTATTTCTTGGACTTTGATTGTGGTCTGGAAA 15635 Query 252630 AGGAATGCATGATGCTACAACACCGAAGAT-AGTGCTTGGGTGAATTTCACAGTGACTGT 252688 ||||| ||| || |||||| || || | ||| ||| ||||||||||| ||| ||| Sbjct 15636 TGGAATAATTGAAGCACAAACACCCAAAATCATTGC-TGGATGAATTTCACAATGAGTGT 15694 Query 252689 AA 252690 || Sbjct 15695 AA 15696 >seq2498 Length=59642 Score = 89.7 bits (98), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 3/155 (2%) Strand=Plus/Minus Query 303627 TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTATACGGCTTTGTGTC 303686 ||| |||| ||||| ||||| || || ||||||||||| |||||||| || | || | Sbjct 45279 TTGTGGCAAGTGTAAGTTCATTTCGTCTCCGTCAAAATCGGCATTATAAGGTGTCGTAAC 45220 Query 303687 CGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACACGGGCTTTATGACACATCAT 303746 | | ||||| ||||||||| ||| | | | ||| | |||||| |||||| Sbjct 45219 TGATAAATTCATACGGAAAGTAG-ACCAAGGA--AGAACTTTAATTCTATGACCCATCAT 45163 Query 303747 AGACATTCTGTGTAGAGTTGGCTGACGATTGAAAA 303781 |||||| |||| | ||||||||||||||||||| Sbjct 45162 TGACATTTTGTGCAATGTTGGCTGACGATTGAAAA 45128 Score = 84.2 bits (92), Expect = 6e-11 Identities = 121/170 (71%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 301783 GATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAATACGGGGAACACCACGG 301842 |||||| |||||| || | ||| | | |||||| | || ||| ||||||||| | Sbjct 47521 GATGGAGTCTTTGGCTTCTTCGAAACGTTAATAATTTCCTTAAGACGCGGAACACCAAGA 47462 Query 301843 GTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTA 301902 || ||||| || | | ||||||||| | |||||||| || ||||| | ||| || Sbjct 47461 GTAACGTTT---TTAGCAGAGACACCAGCATAATGGAAAGTGTTTAGAGTCATTTGTGTT 47405 Query 301903 GTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCCTGG 301952 | ||| ||||| | ||||||||| || | ||||||||||| || || Sbjct 47404 GCTGGTTCACCCAAACTTTGTGCTGCCAAAGCCCCAACCATTTCACCAGG 47355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471752541062650