Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2860 95.1 1e-14 seq2352 84.2 2e-11 >seq2860 Length=84313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | |||||||| || || || || || || |||||||| ||||| | Sbjct 77980 GATGCAAATCTTTGTGAAAACGCTTACTGGAAAGACCATCACCCTCGAAGTGGAAGCTTC 77921 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || | || | || ||| ||| || ||||||||||| || || ||||| ||||| Sbjct 77920 CGATACGATCGAGAATGTCAAAGCAAAAATTCAAGACAAAGAGGGGATCCCTCCGGATCA 77861 Query 24823 ACAACGTTTG 24832 || |||||| Sbjct 77860 GCAGCGTTTG 77851 Score = 93.3 bits (102), Expect = 4e-14 Identities = 100/130 (77%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || ||||| || ||||||||||| || | || Sbjct 78251 ATGCAGATTTTCGTCAAGACGCTTACTGGGAAAACCATCACGCTCGAAGTTGAGTCTTCC 78192 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | || ||| ||||||||||||||||| || || ||||| Sbjct 78191 GACACCATTGAGAACGTTAAGGCCAA-GATTCAAGACAAAGAAGGAATTCCACCTGATCA 78133 Query 24823 ACAACGTTTG 24832 ||||| ||| Sbjct 78132 GCAACGATTG 78123 >seq2352 Length=49960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || || ||||| || || ||||| || ||| | Sbjct 38297 ATGCAAATTTTTGTTAAGACTCTCACGGGAAAGACTATCACTCTTGAAGTGGAGGCCTCG 38238 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || || ||||||||| Sbjct 38237 GACACTATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCACCCGATCAA 38178 Query 24824 CAACGTTTG 24832 |||||| || Sbjct 38177 CAACGTCTG 38169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449878198166000