Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3097 116 3e-21 seq2352 111 1e-19 seq2860 96.9 3e-15 >seq3097 Length=162332 Score = 116 bits (128), Expect = 3e-21 Identities = 103/126 (82%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || || || |||||||||||||| |||||||| |||||| | |||||| |||| | || Sbjct 137012 TGTTGGTCTGGCGGAATACCCTCCTTGTCTTG-AATTTTAGCCTTGACATTTTCAATGGT 137070 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||||||| ||| |||||||| || || |||||||| ||||| || |||||||| ||||| Sbjct 137071 GTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAATCTG 137130 Query 29784 CATTTT 29789 ||| || Sbjct 137131 CATATT 137136 >seq2352 Length=49960 Score = 111 bits (122), Expect = 1e-19 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGT 29723 ||||| |||||||| |||||||| |||||||| |||||| | |||||| |||| | || Sbjct 38446 TGCTGGTCCGGCGGGATACCCTCCTTGTCTTG-AATTTTAGCCTTGACATTTTCAATGGT 38504 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||||| ||| ||||||||||| ||||| || ||||| || ||||| || || ||||| Sbjct 38505 ATCAGAGGCTTCAACTTCAAGAGTGATAGTCTTTCCAGTCAACGTTTTCACGAAGATCTG 38564 Query 29784 CATTTTAAAA 29793 ||| ||| || Sbjct 38565 CATATTAGAA 38574 Score = 105 bits (116), Expect = 5e-18 Identities = 98/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 |||||||| |||||||| || || |||||||| |||||| | ||||||| | || | ||| Sbjct 37635 TGCTGATCTGGCGGAATGCCTTCCTTGTCTTG-AATTTTGGCTTTGACATTCTCAATAGT 37693 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||||||||| || || || ||||| || ||||| ||||| ||||| Sbjct 37694 GTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAAGATCTG 37753 Query 29784 CA 29785 || Sbjct 37754 CA 37755 Score = 86.0 bits (94), Expect = 5e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 ||||| || |||||||| ||||||||||| || |||||| | || || |||| | || Sbjct 37907 TGCTGGTCTGGCGGAATCCCCTCTTTGTCCTG-AATTTTGGCCTTCACGTTTTCAATCGT 37965 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 ||| || |||||||||||||| || || || || || || || |||||||| || || Sbjct 37966 GTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAACAAAAATTTG 38025 Query 29784 CATT 29787 |||| Sbjct 38026 CATT 38029 >seq2860 Length=84313 Score = 96.9 bits (106), Expect = 3e-15 Identities = 180/273 (66%), Gaps = 46/273 (17%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | ||| |||| || | ||| ||||| || ||||||||||| ||||| ||||| Sbjct 77708 TCCTCCACGCAATCGCAAGACAAGATGGAGCGTCGACTCTTTTTGAATATTATAGTCCGC 77767 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCA----------------ATC 29662 | ||||||| || |||||||| ||||||||| | ||| ||| Sbjct 77768 GAGGGTGCGACCGTCTTCGAGTTGCTTGCCAGCAAAAATCTGTAAAACAAACCAATTATC 77827 Query 29663 TT----------------------------TGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || ||||||||||| || || |||||||||||| Sbjct 77828 TTCAAATAAACACAATTACAAACCAAACGCTGCTGATCCGGAGGGATCCCCTCTTTGTCT 77887 Query 29695 TGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || |||||||| ||||||| | || | || || ||| ||| ||||| || || || || Sbjct 77888 TG-AATTTTTGCTTTGACATTCTCGATCGTATCGGAAGCTTCCACTTCGAGGGTGATGGT 77946 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | ||||| ||||| || ||||| Sbjct 77947 CTTTCCAGTAAGCGTTTTCACAAAGATTTGCAT 77979 Score = 91.5 bits (100), Expect = 1e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGT 29723 || ||||| ||||||||||| || ||||| || |||||| | ||||||| |||| | ||| Sbjct 77317 TGTTGATCTGGCGGAATACCTTCCTTGTCCTG-AATTTTGGCTTTGACATTTTCGATAGT 77375 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 |||||| || ||||| || || ||||| || || || | ||||| ||||| || || Sbjct 77376 GTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAAGATTTG 77435 Query 29784 CATT 29787 |||| Sbjct 77436 CATT 77439 Score = 89.7 bits (98), Expect = 4e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 29658 CAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTT 29716 ||||| |||||||| || ||||| || || |||||||| |||||||| || ||| ||| Sbjct 78398 CAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTG-AATTTTTGCCTTCACATTTT 78456 Query 29717 CTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAA 29776 | | ||| |||||| || ||||||||||| || || || || || | || || || | Sbjct 78457 CGATAGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGA 78516 Query 29777 ATATCTGCATTTT 29789 | |||||||| || Sbjct 78517 AGATCTGCATATT 78529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385203002736450