Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_023566.1 Length=56024 Score E Sequences producing significant alignments: (Bits) Value seq299 241 5e-59 >seq299 Length=3019 Score = 241 bits (266), Expect = 5e-59 Identities = 412/594 (69%), Gaps = 23/594 (4%) Strand=Plus/Minus Query 5488 TTCGCACAAGGCTTGCGCAAGCTGGCCAACGCGATTGAGATCGACCTTGCAACGGAAGCC 5547 ||||| || | | ||||| ||||| ||||| | | ||| |||||| || || | | Sbjct 1165 TTCGCCCAGGCCATGCGCGCGCTGGTCAACGAGGTCGAGTCCGACCTGGCCGCGAACTAC 1106 Query 5548 ATGCTCAATGCTTCCCGCGCTTACGGTACGGCTGGCACAACGCCTTTCGGCACCAACCAC 5607 || ||| || |||||||| | || | || ||||| ||||| |||| |||| | | Sbjct 1105 AT---CAAGGCCTCCCGCGCCTGGGGCGCCGCCGGCACCACGCCGTTCGCCACCGATCTG 1049 Query 5608 GGTGAAACGGCACAAGTCCGCAAAATCCTGGACGACAACGGCGCTCCGCTTTCCGAACGC 5667 | || || || || || ||||||||||||| |||||||||||||||| | ||| | Sbjct 1048 AGCGACACCGCCCAGGTGCGCAAAATCCTGGCCGACAACGGCGCTCCGATGAGCGACCTG 989 Query 5668 TCGCTTGTTATCGACACTTCGGCGGGCGCTGCACTCCGCACGCTTTCCAATCTGACGAAG 5727 ||| || |||||||| ||||| ||||| | |||||||| || | || || ||| Sbjct 988 CAGCTCGTGATCGACACCTCGGCCGGCGCCAAGATGCGCACGCTGACCCAGCTCACCAAG 929 Query 5728 GTCAACGAAGCTGGAACGCAGATGAC-----GCTTCGCGACGGTGAGTTGCTGAACCTGA 5782 | ||||||||| | | ||| | ||| ||| ||| | | ||||| || || Sbjct 928 GCCAACGAAGCGG-----CGGATTCCTCGCTGCTGCGCCGCGGCGTGCTGCTGGACGTGC 874 Query 5783 ACGGGCTTTCGATCAAGGAAAGCGCGGGCGTGCAGCAGTTCACGGC--GGGTACTGGCGC 5840 |||| | ||||| ||| |||| | || || | ||| ||| || || | Sbjct 873 ACGGTTTCGCGATCCGTGAATCCGCGCAGATCAAGACGTCC--GGCAAGGGCACCGGATC 816 Query 5841 GTCTTCAACGACCAACGCCGCAGGTTATGCCATCGGTGCGACCGTCATCACACTGGCGTC 5900 | | ||||||||| |||| || || || | ||||||||| ||||| |||||| | Sbjct 815 GGGCGCCACGACCAACACCGCGGGCTACGCGGTGGGTGCGACCACGATCACCCTGGCGGC 756 Query 5901 TGCCGGCACTGGT---GTCATCAAGGCAGGTGATGTTATCACCTTTGCCGGTGACGCCAA 5957 ||| ||||| || |||||| || || ||||| |||||||| || || ||||| || Sbjct 755 TGCAGGCACCGGCACGGTCATC---GCTGGCGATGTCATCACCTTCGCTGGCGACGCGAA 699 Query 5958 CAAATACGTTGTCAAAAGCGGTGACACTGACGTTTCCAACGGCGGCACTATCACGCTTGC 6017 ||| ||||| ||| ||||||||| ||| |||||||||||||| ||||| | || Sbjct 698 CAAGTACGTGGTCGCCTCCGGTGACACCGACACGTCCAACGGCGGCACGATCACCTTGGC 639 Query 6018 CAAGCCGGGCCTTCGTCGCGCAATTCCGGCTGCTGCAACGGCAATCACAATCGT 6071 ||| ||||| || | || ||||||||||| || ||||| ||||| ||||| Sbjct 638 GGCGCCCGGCCTGCGCCAGGCGATTCCGGCTGCGGCGACGGCGATCACCATCGT 585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179147860235400