Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2172 197 1e-44 seq3337 168 5e-36 seq3420 140 2e-27 seq3332 105 5e-17 seq2611 102 6e-16 >seq2172 Length=48972 Score = 197 bits (218), Expect = 1e-44 Identities = 256/348 (74%), Gaps = 7/348 (2%) Strand=Plus/Plus Query 282177 ATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGC 282234 ||||| ||||| |||||||||||| || |||||||| | ||| | || | || | Sbjct 14509 ATGTTCAACAAGCAAATTATCAAAATCCTCTCCTCCCAAATGAGTGTCACCAGCTGTTGA 14568 Query 282235 TCTTACTTGGAA--AAGT-CCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACC 282291 | | |||| || ||| || || ||| | ||||| || |||||| || ||||| Sbjct 14569 TTTAACTTCAAACAAAGAACCCTCAGCAATTGCCAAAACAGAAACATCGAAAGTACCACC 14628 Query 282292 ACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACG 282350 ||| | ||||||||||| | |||| || ||| ||| ||||| | ||||| | Sbjct 14629 ACCAAGGTCAAAAATAAGAATATTCTGATCCCC-TCTCATTTTCTTATCCAATCCATAAG 14687 Query 282351 CAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTC 282410 | ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| | Sbjct 14688 CCAAAGCAGCAGCCGTTGGTTCATTAATAATTCGCAAAACATTAAGACCAGCAATCTGAC 14747 Query 282411 CTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGG 282470 | ||||||||||| ||||| | || ||| |||||||||||||||||||||| || | Sbjct 14748 CCGCATCTTTAGTTGCTTGACGCTGCCCATCATTAAAATATGCAGGAACAGTAACTACAG 14807 Query 282471 CATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTT 282518 |||| ||| | ||||| |||||| | |||||||||| ||| Sbjct 14808 CATCACGAACTGGATGTCCAAGATAAGCTTCAGATGTTTGTTTCCTTT 14855 Score = 91.5 bits (100), Expect = 1e-12 Identities = 127/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 281543 TTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAA 281602 ||||| || || ||| ||||| ||| ||| |||||||| | | ||||| || ||| Sbjct 13501 TTAGTTAAAGCTCTTTCTCCCTCATAAACTTGAATAGTAACAGCTGGCTGATTGTCAGAA 13560 Query 281603 TAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 ||||| ||||| | ||| | || ||||| || | || | |||| || || Sbjct 13561 TAAGTAGTAAAGGTTTGGGAAGTCTTGTGGGGAATAGTAGCATTGCGTTCAACAAGTTTC 13620 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGA 281720 ||||||| ||| ||||| ||||| | ||| | |||||||||||| || ||||| |||| Sbjct 13621 GTCATAACACCCCCAGCGGTTTCAATACCCAAAGAAAGAGGAGTAACGTCAACGAGGA 13678 >seq3337 Length=92621 Score = 168 bits (186), Expect = 5e-36 Identities = 212/289 (73%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 ||||| |||||||||||||| || | | ||||| ||| | || | | | || | ||| Sbjct 80333 CGATTGTCAAAATCTTCACCACCAAGATGAGTATCTCCAGCAGTTGATTTGACCTCAAAA 80274 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | ||||||||||| || || || || ||| ||| ||| || || |||| |||||| || Sbjct 80273 ATTCCATCTTCAATAGTCAGAATAGAAACGTCAAAGGTCCCGCCGCCCAAATCAAATATC 80214 Query 282308 AGTACATTCATTTCT--TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAG 282365 || || ||| ||| ||| | || ||||| | ||||| |||| |||||| || | Sbjct 80213 AGGACGTTCCGCTCTCCTTGACCC--TTCTTATCCAAGCCATAAGCAATAGCAGCGGCGG 80156 Query 282366 TTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGG 282425 | ||||| || || |||| |||||||||||| |||| ||| |||| ||||| || || | Sbjct 80155 TCGGTTCGTTGATGATTCGCAAAACATTAAGCCCAGAGATTGTTCCAGCATCCTTGGTAG 80096 Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 | |||| ||| |||||| || || ||||| || ||||| || ||||| Sbjct 80095 CCTGTCGTTGGCTATCGTTGAAGTAGGCAGGCACCGTAATTACTGCATC 80047 Score = 109 bits (120), Expect = 4e-18 Identities = 204/297 (69%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 281756 AGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCA 281815 || ||||| || |||| |||||| ||||||||||||||||| || ||||| | | ||| | Sbjct 80850 AGGATAGCAGCCTGAACAGCAGCTCCATATGCAACAGCTTCGTCTGGATTGATACTTTTA 80791 Query 281816 TTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGAT 281875 || || | || ||| ||| || | || | ||||| | || || ||||| |||| Sbjct 80790 TTGAGCTCCTTCCCAGAGAAGAAGTCGGACAAAAGTTTTTGAACTTTTGGAATTCGAGTC 80731 Query 281876 GATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAA 281935 ||||| ||||| | ||||| ||||| | || ||||| |||| ||| | ||| | | Sbjct 80730 GATCCACCAACAAGAACAATATCATGAATTTGCGATTTGTCCATTTTCGCATCGCGGATA 80671 Query 281936 ACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAAGTCTGAACAAAGTTCTTCGAATTT 281994 || ||||| || || | | ||| | ||||| || | ||||| || || || Sbjct 80670 GACTTCTCAACCGGATCCATA-GTGCTGCGGAACAAATCAGCGCAAAGCTCCTCAAAACG 80612 Query 281995 AGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 ||| | ||| | || | ||||||| || || || | |||||||| |||||| Sbjct 80611 AGCACGAGTGATGTTGGTGTAGAAATCAATGCCATCAAAGAGAGAATCAATTTCAAT 80555 >seq3420 Length=116350 Score = 140 bits (154), Expect = 2e-27 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||||||| || |||||||||||||| | || |||||| | ||||| Sbjct 6662 CCATAAGCAATAGCAGCAGCTGTCGGTTCATTAATAATACGCACAACATTCAAACCAGAG 6721 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| |||| |||||||| || ||||| | ||| | ||||||||| || || ||||| || Sbjct 6722 ATTGTTCCAGCATCTTTGGTAGCTTGACGTTGAGCATCGTTAAAGTAGGCGGGAACGGTT 6781 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 | ||| |||| | ||||| | || | ||| || || ||| ||||| || | Sbjct 6782 ACAACAGCATGCTTAACTTCATGACCCAAATAGGCTTCGGCAATTTCCTTCATCTTTCCA 6841 Query 282524 AAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCA 282568 | || ||||| ||| || | |||||||| | |||| || | |||| Sbjct 6842 AGAACCATTGCTGAGATCTCTTCTGGAGCAAATTGTTTAGTTTCA 6886 >seq3332 Length=299365 Score = 105 bits (116), Expect = 5e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| || |||||||| |||||||| | || | |||||| ||||||||| Sbjct 216443 CCATAAGCAAGTGCTGCAGCAGTGGGTTCATTGACAACACGCAAAACTCGTAGACCAGCA 216502 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| || ||||||||||| ||||| | ||| |||||||| || || |||||||| || Sbjct 216503 ATTTGACCAGCATCTTTAGTAGCTTGACGTTGAGAATCGTTGAAGTAGGCAGGAACGGTG 216562 Query 282464 ATAACGGCATCTG 282476 || || |||| || Sbjct 216563 ATGACTGCATTTG 216575 Score = 98.7 bits (108), Expect = 7e-15 Identities = 130/181 (72%), Gaps = 12/181 (7%) Strand=Plus/Plus Query 281633 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCA 281692 ||||||||||| |||| |||||| || || | || |||||| ||||| | |||| Sbjct 215606 GGAATTGTTGTATTTCGTCCAATAAGCTTCGTGAAAACACCACCCAAAGTTTCAATACCA 215665 Query 281693 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 281752 |||||||| ||||| ||||| | ||| |||| | | || |||| |||| Sbjct 215666 AGAGAAAGTGGAGTAACATCGAGTAGAACAACCTCTGTAA------CATC------ACCA 215713 Query 281753 ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTT 281812 |||||| | || ||||| ||||| ||| |||||||||||||||||| || |||| | Sbjct 215714 GCAAGAACCCCAGCCTGAATCGCAGCTCCAATTGCAACAGCTTCATCAGGGTTGACAGCT 215773 Query 281813 T 281813 | Sbjct 215774 T 215774 >seq2611 Length=17818 Score = 102 bits (112), Expect = 6e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 400293 TAAATGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCT 400352 || ||| || || ||| | || || ||||||||||| ||||| || ||| | |||| | Sbjct 11663 TAGATGCACACTTATTCTAACGGAAGGAGATTCAGCCAAAACTTTGGCTGTTGCTGGTTT 11604 Query 400353 TAATGTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGT 400412 ||||||||| |||||| |||||| ||||| || ||| | ||||| ||||| ||||| Sbjct 11603 GGGTGTTATTGGCCGAGATTTTTATGGTGTTTTTCCTCTTCGTGGAAAGCTTTTAAATGT 11544 Query 400413 TAGGGATGCTAGTCCTAAA 400431 ||| ||||| | || |||| Sbjct 11543 TAGAGATGCAAATCATAAA 11525 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 399295 ATTTCTGTTTGGAATAATGGTGATGGTATTGATGTAGCAATTCATAAAGAACATAATATA 399354 |||||||||||||||||||| ||| ||| || | || ||||||| | || || Sbjct 12872 ATTTCTGTTTGGAATAATGGACGTGGAATTCCGGTTGTTATGCATAAAGTTGAAAAGATG 12813 Query 399355 TGGGTACCATCAATGATTTTTGGAGAACTTTTAACGTCTACTAATTACGATAAAAACGAG 399414 | |||||| |||||||||||| | | | || ||| |||| ||| || | |||||| Sbjct 12812 TATGTACCAGAAATGATTTTTGGGACATTACTTACCTCTTCTAACTACAATGACAACGAG 12753 Query 399415 GAAAAAACTGTTGGTGGTAAAAATGGTTTTGGCGCTAAGCTTGCTAATATTT 399466 | || || ||||||| |||||||| ||| || ||| | | ||||||| Sbjct 12752 AAGAAGACAACTGGTGGTCGAAATGGTTATGGAGCCAAGTTGACCAATATTT 12701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740461019579700