Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2860 113 9e-20 seq3097 104 5e-17 seq2352 95.1 2e-14 seq1807 95.1 2e-14 >seq2860 Length=84313 Score = 113 bits (124), Expect = 9e-20 Identities = 98/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||||||||| || |||||||| |||||||| ||||| || |||||||| || ||| Sbjct 78405 TGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATAGTA 78464 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || || ||||| | ||| |||||||| || || | |||||||| || |||||| Sbjct 78465 TCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGATCTGC 78524 Query 82809 AT 82810 || Sbjct 78525 AT 78526 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||||||||| || || |||||||| || ||||| || ||||| |||||||| || || Sbjct 77317 TGTTGATCTGGCGGAATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCGATAGTG 77376 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | || ||||| | || || ||||| ||||||| || || ||||| || ||| Sbjct 77377 TCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAAGATTTGC 77436 Query 82809 ATT 82811 ||| Sbjct 77437 ATT 77439 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || ||||| || || || ||||| || || || ||||| ||||| || |||||||| || Sbjct 77586 TGCTGATCAGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTTTCAATAGTG 77645 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 || | ||| ||||| | || || ||||| || ||||| ||||||||||| |||||| Sbjct 77646 TCTGATGCTTCCACTTCAAGGGTGATGGTCTTTCCCGTCAATGTCTTTACAAAAATCTGC 77705 Query 82809 ATT 82811 ||| Sbjct 77706 ATT 77708 >seq3097 Length=162332 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 ||||| ||||| || || || ||||| |||||||| || || || ||||||||||| || Sbjct 137012 TGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGTG 137071 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || ||| ||||| | || ||||| ||||| || || ||||| ||||| |||||| Sbjct 137072 TCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAATCTGC 137131 Query 82809 AT 82810 || Sbjct 137132 AT 137133 >seq2352 Length=49960 Score = 95.1 bits (104), Expect = 2e-14 Identities = 98/127 (77%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 || || || || || || || ||||| |||||||| || || || ||||||||||| ||| Sbjct 38446 TGCTGGTCCGGCGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGTA 38505 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| | ||| ||||| | ||| || ||||| || |||||||| || || || |||||| Sbjct 38506 TCAGAGGCTTCAACTTCAAGAGTGATAGTCTTTCCAGTCAACGTTTTCACGAAGATCTGC 38565 Query 82809 ATTATTA 82815 | ||||| Sbjct 38566 A-TATTA 38571 >seq1807 Length=32432 Score = 95.1 bits (104), Expect = 2e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 82689 TGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTA 82748 |||||||| || || || || |||||||||||||| || || || ||||||||||| ||| Sbjct 21101 TGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACATTTTCAATAGTA 21042 Query 82749 TCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGC 82808 ||| || || ||||| | || || || || || || | ||||| ||||| |||||| Sbjct 21041 TCAGAAGCCTCAACTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGACAAAAATCTGC 20982 Query 82809 AT 82810 || Sbjct 20981 AT 20980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981783800169550