Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2855 91.5 3e-13 seq2860 86.0 1e-11 >seq2855 Length=35860 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 206180 TTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| |||||||||||| || || ||||||||| |||| ||||| || ||||| || Sbjct 32008 TTTGTCAAAACGCTCACCGGGAAGACGATCACTCTGGATGTGGAGCAGTCGGACACCATC 31949 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| ||||| || || || || || || || || ||| | || Sbjct 31948 GAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCAGAGCAGCAACGCCTC 31889 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAA 206348 ||||||||||| ||||||||||| ||||| | || ||||| || ||||| Sbjct 31888 ATCTTCGCCGGGAAGCAGTTGGAGGATGGTCGAACGTTGGCTGACTACAA 31839 >seq2860 Length=84313 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||| ||||||||| || ||||| || || ||||||| |||||||||||| | || Sbjct 78259 CGAAGTCGCAAAACAAGATGGAGAGTCGATTCCTTCTGGATATTATAGTCAGCAAGGGTG 78318 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | || || || ||||||||||| || ||||| Sbjct 78319 CGCCCGTCCTCAAGCTGCTTTCCAGCAAAGAT 78350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181768559827450