Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2860 100 3e-16 seq2352 98.7 1e-15 seq3097 93.3 4e-14 seq1807 84.2 2e-11 >seq2860 Length=84313 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 ||| ||||||||||||||| || || || || ||||| |||||||||||| |||||| Sbjct 77847 AAACCAAACGCTGCTGATCCGGAGGGATCCCCTCTTTGTCTTGAATTTTTGCTTTGACAT 77906 Query 134641 CGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700 || | || ||||| | |||||| ||||| || ||||| || || || | ||||| | Sbjct 77907 TCTCGATCGTATCGGAAGCTTCCACTTCGAGGGTGATGGTCTTTCCAGTAAGCGTTTTCA 77966 Query 134701 CGAAAATTTGCAT 134713 | || |||||||| Sbjct 77967 CAAAGATTTGCAT 77979 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 ||| ||| ||||||||||| || || |||||||| || |||||||||||| || || Sbjct 78394 AAACCAATCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACAT 78453 Query 134641 CGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700 || | || || || | ||||| || ||||| || || || ||||| | ||| || | Sbjct 78454 TTTCGATAGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTA 78513 Query 134701 CGAAAATTTGCATTTTG 134717 |||| || ||||| ||| Sbjct 78514 CGAAGATCTGCATATTG 78530 >seq2352 Length=49960 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 134579 AAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 ||||| ||| ||||||||||| ||||| |||||||| || ||||||||||| |||||| Sbjct 37622 AAAAACCAAGCGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGAC 37681 Query 134639 CGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTT 134698 || | ||||| || | || || || ||||| ||||| || || || |||||||| Sbjct 37682 ATTCTCAATAGTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTT 37741 Query 134699 AACGAAAATTTGCA 134712 || || || |||| Sbjct 37742 CACAAAGATCTGCA 37755 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/138 (76%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 134579 AAAAATCAA-ACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGA 134637 || || ||| ||||||||| || ||||| || || ||||| || |||||||| || | Sbjct 37893 AACAAACAAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCA 37952 Query 134638 CCGCGTCCAAT-GTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 | | | |||| ||||| || | || || || ||||| ||||| || ||||| ||||| Sbjct 37953 C-GTTTTCAATCGTGTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTC 38011 Query 134697 TTAACGAAAATTTGCATT 134714 ||||| |||||||||||| Sbjct 38012 TTAACAAAAATTTGCATT 38029 >seq3097 Length=162332 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 ||| ||| ||||| || || ||||| || || || || ||||||||||| ||||| Sbjct 137001 AAACCAAGCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACAT 137060 Query 134641 CGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700 || | ||||| || | ||| || || || ||||| ||||| ||||||||||| |||| Sbjct 137061 TTTCAATGGTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAA 137120 Query 134701 CGAAAATTTGCATTTT 134716 | ||||| ||||| || Sbjct 137121 CAAAAATCTGCATATT 137136 >seq1807 Length=32432 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 134581 AAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCG 134640 ||| ||||||||| ||||| ||||| ||||| || || ||||||||||| || || Sbjct 21112 AAACCAAACGCTGTTGATCAGGCGGGATGCCCTCCTTATCTTGAATTTTGGCCTTAACAT 21053 Query 134641 CGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAA 134700 || | || || || | || || ||||| ||||| ||||| ||||| | ||| || | Sbjct 21052 TTTCAATAGTATCAGAAGCCTCAACTTCGAGTGTAATAGTTTTTCCGGTGAGAGTCTTGA 20993 Query 134701 CGAAAATTTGCATTTT 134716 | ||||| ||||| || Sbjct 20992 CAAAAATCTGCATATT 20977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505376604694000