Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1983 122 1e-22 >seq1983 Length=15124 Score = 122 bits (134), Expect = 1e-22 Identities = 202/289 (70%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 69744 TTTATTTCCTCCCTGATCTATGTATC-TGGCAGTGTTATTATAGACTCTCAGCATCGGAA 69802 |||||| ||||| ||||| || || | || || | |||| | ||| | |||||| | Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGA-ATTAAAAACTTGTAACATCGGTA 9095 Query 69803 TAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTAC 69862 |||| |||||||| || |||||||| ||||| || || || || ||||| | Sbjct 9094 TAATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAAT 9035 Query 69863 TAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGT 69922 ||| || || || |||||||| ||| ||| || || |||||||| || | ||| | Sbjct 9034 GAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTTT 8975 Query 69923 CATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGAT 69982 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 8974 CAAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGTG 8915 Query 69983 GATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCA 70031 || || | || |||||||| ||||| || ||||| |||||||||||||| Sbjct 8914 GACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCA 8866 Score = 89.7 bits (98), Expect = 7e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 70083 ATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATT 70142 ||| ||||| | || |||||||| ||||||||||| || | || || ||| ||| Sbjct 8461 ATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCAACTACTTTTCCATT 8402 Query 70143 TATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA-TGAAAAGT 70201 ||| ||| ||||| || ||| || |||||||| |||||||| |||| |||||| | Sbjct 8401 AATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAAGTGTAGTGAAAA-T 8343 Query 70202 CTCTTTCGTAAATAATAACAGAATTTAGTTT 70232 | | || |||||||| || ||||| ||||| Sbjct 8342 CACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 69517 TCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAATGAC 69576 || ||||| | ||||||| ||||||||| ||||||||| || |||||||| || ||| Sbjct 9932 TCAAATTCCTTTCCCCAACAATCATCCAAGTTAGGACATTCGTTAGGACACATTAAAGAC 9873 Query 69577 CACACATCATCATCCTTAACTCGTTTCATAAA 69608 || || |||||||| | |||||||||||||| Sbjct 9872 CAATCACCATCATCCCTCACTCGTTTCATAAA 9841 Score = 89.7 bits (98), Expect = 7e-13 Identities = 185/274 (68%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 68404 GTACGTAGATAGTACATACCGGTTTTCA--GACCTAGACTCCATCCGTAGAAATGCATAC 68461 ||||| | ||||||||| || ||||| | |||| ||| | |||||||||| Sbjct 11414 GTACGCAAATAGTACATTCCAGTTTTGATGGACCATTTTCCCAAGCAAAGAAATGCATTG 11355 Query 68462 TTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGA 68521 || | ||| | ||| ||||||| || ||||| | ||| | |||||||||||||| | Sbjct 11354 AAGTAATTTTTGCATAGGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGATCAA 11295 Query 68522 TGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAG 68581 | |||| ||| ||| ||||| || || || ||| ||||||||||||| || Sbjct 11294 TAAAAGGAGCTCGGTCTATAGCCATATTGATGATTTCACGTTGTGGAATTTCCCAAACAG 11235 Query 68582 TCTTAAAAATCTGTTTGATATCATCTGGAAGGCTCG---TATTTTGAATGGATCCACCAT 68638 | || | | |||||| || ||||| | | | | ||||||| || ||||| | Sbjct 11234 TTTTGTAGAGAGCTTTGATTTCCTCTGGTAATCCAGGAATGTTTTGAACAGAACCACCGT 11175 Query 68639 CGGATATAATTATATTCTTGATCTCATCATTCCA 68672 | ||||| | |||| | || | |||||||| Sbjct 11174 CAGATATTAAACGATTCCTCATTTGCTCATTCCA 11141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686879177058000