Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3194 114 1e-20 seq1894 109 4e-19 seq2303 96.9 3e-15 >seq3194 Length=69361 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 47261 TTTCTCGGGTTAGACAATGCAGGAAAAACGGCATTACTCCACATGCTCAAATACAATTGC 47320 ||||| || | || || || ||||| || | ||||| |||||| | ||| | | | Sbjct 26113 TTTCTTGGCCTTGATAACGCTGGAAAGACAACTTTACTTCACATGTTAAAAGATGACCGG 26054 Query 47321 ATGAAAGAGCATAACCCTACATTACATCCGACCTCTGAACAACTAACAATTGCTGGCATA 47380 || | ||||| ||| ||| | |||||||| |||||| || || || ||| |||||| Sbjct 26053 ATTGCACAGCATGTCCCAACACTTCATCCGACTTCTGAAGAATTATCACTTGGTGGCATT 25994 Query 47381 ACATTTAGCACATTTGATTTAGGAGGACACATTCAAGCGCGTAGAATGTGGCAAAATTAT 47440 || | || |||||||| ||||| ||| |||||||||||||| ||||| ||| |||| Sbjct 25993 CGCTTCACAACTTTTGATTTGGGAGGGCACGTTCAAGCGCGTAGAGTGTGGAAAAGTTAT 25934 Query 47441 TTTCATGTCGTTGATGCTATAGTTTATATTGTAGACTGTGCAGATT 47486 || | | | || ||||| || | | |||| ||| ||| |||| Sbjct 25933 TTCCCAGCATTGGACGCTATTGTCTTTCTTGTCGACGTTGCTGATT 25888 >seq1894 Length=37626 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 ||| ||||||||||| ||| | || ||||| || ||||| || || || || ||| Sbjct 18015 TTCATTTGGAGAACGTCTTATTGCATTTGCTTCAGTTGAAGGAATATTTTTCTCTGGAAG 18074 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 ||||| || || |||||||| |||||||| ||| | |||||||| ||||| || Sbjct 18075 TTTTGCTGCAATTTTTTGGTTGAAGAAACGTGGTCTTATGCCTGGATTGACACAAAGTAA 18134 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 ||| ||||| |||||||||||| | ||| | ||||||||||| || Sbjct 18135 TGAATTAATTTCTCGTGATGAAGGTCTTCATCGGGATTTTGCTTGTTT 18182 Score = 102 bits (112), Expect = 6e-17 Identities = 74/86 (86%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||||| || ||||| ||| |||||||||| || ||||||||||| |||||||| ||| Sbjct 17761 CGTTTTGCTCAGGAAGTGCAAATACCAGAAGCTCGTTGTTTTTATGGCTTTCAAATAGCC 17820 Query 43964 ATAGAAAATATTCATTCGGAAATGTA 43989 || || ||||||||||| |||||||| Sbjct 17821 ATTGAGAATATTCATTCAGAAATGTA 17846 >seq2303 Length=15393 Score = 96.9 bits (106), Expect = 3e-15 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| || ||||||||||||||||| || ||||| || || ||||||| ||||||||| Sbjct 7284 GGTGCAACAGGAGTACATGACACTGTGGTTAATCAGCTTCTCACAAAATTGGACGGTGTT 7225 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 | ||| | || |||||| | |||||||| |||||||| Sbjct 7224 GAACAATTAAACAATATTCTCGTTATTGGAATGACTAA 7187 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 ||||| ||||||||| | | |||| ||| || || || ||||||||||||||||| Sbjct 7601 AAACACGTTCGTGGAATCCTTCTTTTTGGCCCTCCTGGAACAGGAAAAACATTAATTGCT 7542 Query 19396 AGAGAACTTAGTAAATTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 | || || ||||| | |||| | ||||| |||||||| ||||| |||||| Sbjct 7541 CGTCAAATTGGTAAAATGCTTAATGCTCGCGAACCT---AAAATTGTGAATGGACCTGAA 7485 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGA--AGAAAATGTACGACGTTTGTTTGCTGACG 19510 || || |||||| ||| || |||| || |||||| || || |||||||| | Sbjct 7484 ATTTTGGATAAATTTGTTGGAGAATCTGAGTCTAAAATG--AGAAAATTATTTGCTGATG 7427 Query 19511 CTGAAGAAGAA 19521 |||| || ||| Sbjct 7426 CTGAGGAGGAA 7416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397439288217250