Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq3285 93.3 2e-14 seq1714 89.7 2e-13 >seq3285 Length=54983 Score = 93.3 bits (102), Expect = 2e-14 Identities = 109/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 22761 ATATCCAGTGAtttttttCT-CCATTTTAGCTTCCTTAGCTCCTG-AAAATCTCGATAAC 22818 |||||||||||||| | || ||||||| ||| | || | ||| ||||||||||| || Sbjct 1 ATATCCAGTGATTTCTAGCTGCCATTTTTTGTTCTTGAGTTTCTGGAAAATCTCGATTAC 60 Query 22819 TCAAAAAATAC-GCCCGGTAGTGATCTTATTTCATTATGGTGAAAG-TTGGAACCTCTTA 22876 | ||||||| | || ||||| ||| || |||| || | |||||| | |||||||||| Sbjct 61 TAAAAAAATGCGGCGTGGTAGGGATATTCTTTCGATAAGATGAAAGCTGGGAACCTCTTG 120 Query 22877 CGTGCCGATCAACGTCTCATTT 22898 || ||| | ||||| |||||| Sbjct 121 CGGTCCGGTTAACGTTTCATTT 142 >seq1714 Length=4707 Score = 89.7 bits (98), Expect = 2e-13 Identities = 114/149 (77%), Gaps = 6/149 (4%) Strand=Plus/Plus Query 22743 GGATATATCAACGGTGGTATATCCAGTGA-tttttttCTCCATTTTAGCTTCCTTAGCTC 22801 ||| |||||||||||||||| |||||||| ||||||| |||| ||||| |||| |||| | Sbjct 52 GGAGATATCAACGGTGGTATGTCCAGTGATTTTTTTTTTCCAGTTTAGGTTCC-TAGCCC 110 Query 22802 CTGAAAATCTCGATAACTCAAAA-AATACGCCCGGTAGTGATCTTAT-TTCATTATGGTG 22859 | | |||| | || || |||||| | |||||| | | || ||| | |||||| | Sbjct 111 CCGTAAATATAGAAAAATCAAAATAGAACGCCCAATCGCATTCGTATGCCCCTTATGGCG 170 Query 22860 AAAG-TTGGAACCTCTTACGTGCCGATCA 22887 |||| |||||| | | ||||||||||| Sbjct 171 AAAGAATGGAACGACGT-CGTGCCGATCA 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184437243527100