Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3048 102 1e-16 >seq3048 Length=35267 Score = 102 bits (112), Expect = 1e-16 Identities = 151/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTT-TCGCGGGCGATTTCAAAGA 11687 |||||||||||||||||| |||| |||||| || |||||| | || || ||||| || | Sbjct 1743 CGCATCAATCTCATCAATAAAGAGAATACACGG-TGATTTCTTCCGTGCCATTTCGAACA 1801 Query 11688 GATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGC 11747 ||| | || | | | || ||||||||||||||||| | ||| | | | |||| Sbjct 1802 TATCTCTTACACGTCCTGGGCCAACACCAACAAACATCTCAAGAAACTCCGAGCCAGA-A 1860 Query 11748 ACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 || | ||||| |||||||| | || || || | ||| |||||| | || || || Sbjct 1861 ACGGTTATGAAGGGGACATTCGCCTCTCCTGCTGTAGCTTTGGCGAGCAATGTTTTGCCG 1920 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCC 11835 || |||||| ||| | ||| |||||||| Sbjct 1921 GTTCCTGGCGGACCAGTGAGGAGGGCGCC 1949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628004916120000