Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2860 131 2e-25 seq1807 127 2e-24 seq2352 122 1e-22 seq3097 118 1e-21 >seq2860 Length=84313 Score = 131 bits (144), Expect = 2e-25 Identities = 187/274 (68%), Gaps = 47/274 (17%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| |||||||| ||||| || |||||||| || ||| | | Sbjct 78526 ATGCAGATCTTCGTAAAGACTCTTACCGGAAAGACGATCACTCTTGAAGTGGAGGCTTCT 78467 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| ||||||| |||||||| |||||||| || ||||||||||| ||| Sbjct 78466 GATACTATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 78407 Query 27526 CAGCG-------------------TCT--------------AATT--------------T 27538 ||||| ||| |||| | Sbjct 78406 CAGCGATTGGTTTGTTTTAATCATTCTCAGATTGTTTTGGCAATTTATATTTTCAGATCT 78347 Query 27539 TTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 ||||||| ||||| || ||||| | || ||||| || ||||||||| |||| ||||||| Sbjct 78346 TTGCTGGAAAGCAGCTTGAGGACGGGCGCACCCTTGCTGACTATAATATCCAGAAGGAAT 78287 Query 27599 CCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| || ||||| ||||| ||||| Sbjct 78286 CGACTCTCCATCTTGTTTTGCGACTTCGTGGTGG 78253 Score = 114 bits (126), Expect = 1e-20 Identities = 183/275 (67%), Gaps = 46/275 (17%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || || || || |||||||| || || || |||||| || Sbjct 77439 AATGCAAATCTTTGTGAAAACTCTGACAGGGAAGACTATCACCCTCGAAGTTGAGGCATC 77380 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | |||| | || || ||||||||||||||||| || ||||| ||||| || Sbjct 77379 TGACACTATCGAAAATGTCAAAGCCAAAATTCAGGACAAGGAAGGTATTCCGCCAGATCA 77320 Query 27525 GCAGCG-------------------------------------TCTA---------ATTT 27538 ||||| |||| || | Sbjct 77319 ACAGCGTTTGGTTTGTTTTAATGATTTTATTAAATCTTTTAACTCTAAATTTCTAGATCT 77260 Query 27539 TTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAAT 27598 | ||||| ||||| |||||||||| |||||| || || ||||| || | ||||| || | Sbjct 77259 TCGCTGGAAAGCAGCTCGAGGATGGTCGTACGCTCGCTGACTACAACATTCAAAAAGAGT 77200 Query 27599 CCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | |||||||| | |||||||||||||| |||||| Sbjct 77199 CTACTCTTCACTTGGTCTTGCGTCTTCGTGGTGGA 77165 Score = 102 bits (112), Expect = 9e-17 Identities = 82/99 (83%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || |||||||| || || || |||| ||| ||||| || |||||||| ||||||| Sbjct 77537 ATCTTCGCTGGTAAACAGCTTGAAGATGGTCGAACCCTTGCCGACTATAACATCCAAAAA 77478 Query 27595 GAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||||||||||| || || |||||||| ||||||||| Sbjct 77477 GAATCCACTCTTCACCTCGTTTTGCGTCTCCGCGGTGGA 77439 Score = 100 bits (110), Expect = 3e-16 Identities = 179/271 (66%), Gaps = 44/271 (16%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||||||||| || || || || || || || |||||||| Sbjct 78251 ATGCAGATTTTCGTCAAGACGCTTACTGGGAAAACCATCACGCTCGAAGTTGAGTCTTCC 78192 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || ||||| ||||| || |||||||| || || ||| Sbjct 78191 GACACCATTGAGAACGTTAAGGCCAAGATTCAAGACAAAGAAGGAATTCCACCTGATCAG 78132 Query 27526 CAGCG-----------------------------TCT-------AATTTTT--------G 27541 || || ||| ||||||| | Sbjct 78131 CAACGATTGGTTTTCATCTTTTTATTTATTTGGTTCTCAAACTCAATTTTTAGATCTTCG 78072 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 ||||||| || || ||||||| ||||| || || || ||||| |||| |||||||| | Sbjct 78071 CTGGTAAACAGCTTGAGGATGGACGTACTCTTGCTGATTATAACATCCAGAAGGAATCGA 78012 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| || ||||| ||||| ||||| Sbjct 78011 CTCTTCATCTTGTGTTGCGACTTCGTGGTGG 77981 Score = 89.7 bits (98), Expect = 6e-13 Identities = 175/272 (64%), Gaps = 44/272 (16%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || |||||||| || ||||| || || || || || || | Sbjct 77979 ATGCAAATCTTTGTGAAAACGCTTACTGGAAAGACCATCACCCTCGAAGTGGAAGCTTCC 77920 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || |||||||| ||||| ||||| || ||||| || ||| Sbjct 77919 GATACGATCGAGAATGTCAAAGCAAAAATTCAAGACAAAGAGGGGATCCCTCCGGATCAG 77860 Query 27526 CAGCGT--------------------------------------------CTAATTTTTG 27541 |||||| | ||||||| Sbjct 77859 CAGCGTTTGGTTTGTAATTGTGTTTATTTGAAGATAATTGGTTTGTTTTACAGATTTTTG 77800 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 |||| ||||||||||| || | ||| ||||| || ||||||||| | ||||| || || | Sbjct 77799 CTGGCAAGCAACTCGAAGACGGTCGCACCCTCGCGGACTATAATATTCAAAAAGAGTCGA 77740 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || ||||| |||||||| | || || ||| Sbjct 77739 CGCTCCATCTTGTCTTGCGATTGCGTGGAGGA 77708 >seq1807 Length=32432 Score = 127 bits (140), Expect = 2e-24 Identities = 185/273 (68%), Gaps = 45/273 (16%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || ||||| || |||||||| || || |||||| | | Sbjct 20980 ATGCAGATTTTTGTCAAGACTCTCACCGGAAAAACTATTACACTCGAAGTTGAGGCTTCT 21039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | ||||| |||||||| || |||||||| || || || || || Sbjct 21040 GATACTATTGAAAATGTTAAGGCCAAAATTCAAGATAAGGAGGGCATCCCGCCTGATCAA 21099 Query 27526 CAGCGT--------------------------------------CTAATTTT-------T 27540 |||||| ||| |||| | Sbjct 21100 CAGCGTTTGGTTTGTATATTTTTTCTAAGTTTACTTGCAGGGTTCTATTTTTAGATCTTT 21159 Query 27541 GCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCC 27600 |||||||||||||| ||||||| || || |||| || ||||| |||| ||||||||| Sbjct 21160 GCTGGTAAGCAACTTGAGGATGGGCGAACTTTAGCTGATTATAACATCCAGAAGGAATCC 21219 Query 27601 ACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 || |||||| | ||||| ||||||||||||||| Sbjct 21220 ACCCTTCATTTGGTCTTACGTCTTCGCGGTGGA 21252 >seq2352 Length=49960 Score = 122 bits (134), Expect = 1e-22 Identities = 190/281 (68%), Gaps = 43/281 (15%) Strand=Plus/Minus Query 27395 ATATTACTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGG 27454 ||||| ||| ||||| ||||| || || ||| | || || |||||||| |||||||| | Sbjct 38577 ATATT-CTAATATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACTATCACTCTTGAAG 38519 Query 27455 TTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC 27514 |||| | ||||| ||||| |||| | |||||||||||||| ||||||||||| || | Sbjct 38518 TTGAAGCCTCTGATACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATCC 38459 Query 27515 CTCCAGACCAGCAGCG-------TCTA--------------------------------- 27534 | || ||||||||||| | || Sbjct 38458 CGCCGGACCAGCAGCGCTTGGTTTGTAAACTTACCATTGTAAAATTATAACTAAATTTAT 38399 Query 27535 --ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAA 27592 || || || || ||||| || ||||| | ||| || || || || |||||| |||||| Sbjct 38398 AGATCTTCGCCGGGAAGCAGCTTGAGGACGGTCGAACTCTTGCGGATTATAATATCCAAA 38339 Query 27593 AGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 ||||||| ||||| ||| | || ||||||| ||||||||| Sbjct 38338 AGGAATCGACTCTCCATTTGGTTCTGCGTCTCCGCGGTGGA 38298 Score = 120 bits (132), Expect = 3e-22 Identities = 104/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| | ||||| ||||| || |||||||| || ||| | Sbjct 38029 AATGCAAATTTTTGTTAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGGCCTC 37970 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| ||||||| |||||||||||||| ||||| ||||| |||||||| Sbjct 37969 GGACACGATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAGGGGATTCCGCCAGACCA 37910 Query 27525 GCAGCGTCT 27533 ||||||||| Sbjct 37909 GCAGCGTCT 37901 Score = 111 bits (122), Expect = 2e-19 Identities = 181/270 (67%), Gaps = 43/270 (16%) Strand=Plus/Minus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| |||||||| || || | || || ||||| || |||||||| |||||| | || Sbjct 37755 TGCAGATCTTTGTGAAAACTTTGACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCTG 37696 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | |||| ||| | || || |||||||| |||||||| || ||||| ||||| |||| Sbjct 37695 ACACTATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGCATTCCGCCAGATCAGC 37636 Query 27527 AGCG----------------------------------TCT-AATTT--------TTGCT 27543 |||| ||| ||||| | ||| Sbjct 37635 AGCGCTTGGTTTTTATTTGTTATTTGTCAGTTTCTTATTCTTAATTTCCAGATCTTCGCT 37576 Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603 || ||||| || ||||||| ||| || || |||||||| || |||| ||||| ||||| Sbjct 37575 GGCAAGCAGCTTGAGGATGGTCGAACTCTCGCAGACTACAACATCCAGAAGGAGTCCACC 37516 Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||||| | ||||| ||||||||||||||| Sbjct 37515 CTTCATTTGGTCTTACGTCTTCGCGGTGGA 37486 >seq3097 Length=162332 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | |||||||| || ||||| ||||| ||||| | | Sbjct 137133 ATGCAGATTTTTGTTAAGACTTTAACCGGCAAAACGATTACGCTTGAAGTTGAAGCTTCT 137074 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | |||||||||||||| ||||||||||| ||||| |||||||| Sbjct 137073 GACACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATTCCGCCAGACCAA 137014 Query 27526 CAGCG 27530 ||||| Sbjct 137013 CAGCG 137009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570285805364000