Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2352 113 4e-20 seq2860 109 5e-19 seq3097 96.9 3e-15 seq1807 91.5 1e-13 >seq2352 Length=49960 Score = 113 bits (124), Expect = 4e-20 Identities = 101/127 (80%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| ||||| |||||| |||| || ||| | || ||||||||||| || | || | Sbjct 37755 TGCAGATCTTTGTGAAAACTTTGACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCTG 37696 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || | ||||||| |||||| |||||||||||||| |||||||| || || ||||| | Sbjct 37695 ACACTATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAAGGCATTCCGCCAGATCAGC 37636 Query 27109 AGCGTTT 27115 |||| || Sbjct 37635 AGCGCTT 37629 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||||| || || ||| |||| |||||||||||||| | || Sbjct 38297 ATGCAAATTTTTGTTAAGACTCTCACGGGAAAGACTATCACTCTTGAAGTGGAGGCCTCG 38238 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || || || || || |||||||| ||||| |||||||||||| Sbjct 38237 GACACTATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCACCCGATCAA 38178 Query 27108 CAGCGT 27113 || ||| Sbjct 38177 CAACGT 38172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||| ||| | || ||||||||||| || | || Sbjct 38028 ATGCAAATTTTTGTTAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGGCCTCG 37969 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | || || |||||||| |||||||| || || || || || || Sbjct 37968 GACACGATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAGGGGATTCCGCCAGACCAG 37909 Query 27108 CAGCGT 27113 |||||| Sbjct 37908 CAGCGT 37903 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| |||| || ||| |||| ||||||||||| ||| | || Sbjct 38567 ATGCAGATCTTCGTGAAAACGTTGACTGGAAAGACTATCACTCTTGAAGTTGAAGCCTCT 38508 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| |||||||||||||| || || || || || || || Sbjct 38507 GATACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATCCCGCCGGACCAG 38448 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 38447 CAGCGCTT 38440 >seq2860 Length=84313 Score = 109 bits (120), Expect = 5e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||| || || || ||| | || || || ||||||||| | ||| Sbjct 77979 ATGCAAATCTTTGTGAAAACGCTTACTGGAAAGACCATCACCCTCGAAGTGGAAGCTTCC 77920 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| |||| |||||| |||||||||||||||||| || || || || ||||| Sbjct 77919 GATACGATCGAGAATGTCAAAGCAAAAATTCAAGACAAAGAGGGGATCCCTCCGGATCAG 77860 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 77859 CAGCGTTT 77852 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| ||||||||||| || ||| |||| || || ||||| || | || Sbjct 77438 ATGCAAATCTTTGTGAAAACTCTGACAGGGAAGACTATCACCCTCGAAGTTGAGGCATCT 77379 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| |||||||| ||||| ||||| || || || |||||| Sbjct 77378 GACACTATCGAAAATGTCAAAGCCAAAATTCAGGACAAGGAAGGTATTCCGCCAGATCAA 77319 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 77318 CAGCGTTT 77311 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || |||| || ||| | || || |||||||||||| | || Sbjct 77707 ATGCAGATTTTTGTAAAGACATTGACGGGAAAGACCATCACCCTTGAAGTGGAAGCATCA 77648 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || || ||||||||||| || ||||| ||||| Sbjct 77647 GACACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAAGAAGGGATCCCACCTGATCAG 77588 Query 27108 CAGCG 27112 ||||| Sbjct 77587 CAGCG 77583 Score = 100 bits (110), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| ||||| ||||| ||| | || |||||||||||||| | || Sbjct 78526 ATGCAGATCTTCGTAAAGACTCTTACCGGAAAGACGATCACTCTTGAAGTGGAGGCTTCT 78467 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||||||||||||| |||||||| || || ||||| Sbjct 78466 GATACTATCGAAAATGTGAAGGCAAAAATTCAAGACAAGGAAGGCATTCCTCCAGATCAG 78407 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 78406 CAGCGATT 78399 >seq3097 Length=162332 Score = 96.9 bits (106), Expect = 3e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| | |||||||| | ||||| |||||||| ||| | || Sbjct 137133 ATGCAGATTTTTGTTAAGACTTTAACCGGCAAAACGATTACGCTTGAAGTTGAAGCTTCT 137074 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||||||||| || || || || || || ||| Sbjct 137073 GACACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATTCCGCCAGACCAA 137014 Query 27108 CAGCGTTT 27115 ||||| || Sbjct 137013 CAGCGCTT 137006 >seq1807 Length=32432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||||| ||||| || ||||||| || ||||| || | || Sbjct 20980 ATGCAGATTTTTGTCAAGACTCTCACCGGAAAAACTATTACACTCGAAGTTGAGGCTTCT 21039 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||||||||||| || || ||||| || || |||||| Sbjct 21040 GATACTATTGAAAATGTTAAGGCCAAAATTCAAGATAAGGAGGGCATCCCGCCTGATCAA 21099 Query 27108 CAGCGTTT 27115 |||||||| Sbjct 21100 CAGCGTTT 21107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434899644144000