Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq299 125 2e-24 >seq299 Length=3019 Score = 125 bits (138), Expect = 2e-24 Identities = 406/624 (65%), Gaps = 30/624 (5%) Strand=Plus/Minus Query 29743 GCCCGTTTACGTTGAGGACGACGGCAAAGAGGTTGCCTTCGATGCGGTTGGC-ACCCGGG 29801 |||||| | ||| | | |||||||| || | |||||||||| | || || | Sbjct 2273 GCCCGTGTTCGTCCATGCGGACGGCAAGGAAGCCCCCTTCGATGCCGAGTGCGACGCTCT 2214 Query 29802 CGACCATCACCCGACTGAACGCCGAAGCCAAGCAGCACCGCGAGCGCGCTGAGACCGCCG 29861 | ||||| || ||||||| || |||||| |||||||| || || |||||| Sbjct 2213 CCACCATTGGGCGCCTGAACGGTGAGGCCAAGTCCCACCGCGAAGGCAAGGAAGCCGCCG 2154 Query 29862 AGAAGACCGCAAAAGCCTTCGAAGGTATCGATGACGCCGGGGCAGCCCGCAAGGCTCTGG 29921 ||||| || || || |||||||| |||| ||| | || || | ||||| ||| Sbjct 2153 AGAAGGCCCTCAAGGCGTTCGAAGGCATCGCCGACCCGACCGCCGCGCTGAAGGCGCTG- 2095 Query 29922 AGATCGTCGCAAA---CCTCGACGCGAAGAAGCTGGTGGATGCCGGCGAGGTCGAGAAGG 29978 | ||| | || ||| |||| ||||||||||||||||||||||||| || |||| Sbjct 2094 --AGCGTGGTGAAGAGCCTGGACGAGAAGAAGCTGGTGGATGCCGGCGAGCGAGACAAGG 2037 Query 29979 TGAAGCAGGAAATCGCCAAGGGCTATCAGGCCCAGCTGGACGAAGCCAAC---ACCAAGG 30035 || ||| || |||| || | | || | ||| | | | | |||| Sbjct 2036 CGATCGCCGAAGCCGTCAAGAGCGTCGAAG---AGAAGTACGCCCCGATCGTGAAGAAGG 1980 Query 30036 C-GCAGACCCTAGAGCAGCAACTGTACGGCGAGAAGATCGGCGGCAGCTTCGCTCGCTCC 30094 | | |||| | ||| ||| ||| | | | | ||||||||| ||| |||| Sbjct 1979 CCGGCGACC-TGGAGTCGCAGCTGAATGCCCACCTCATCGGCGGCGCGTTCAGCAACTCC 1921 Query 30095 AAGGTCATCGCCGAGAAGCTGGCTGTC----------CCGGCA--GACATGGTGCAGGCC 30142 ||| |||||||||||||| | || | | ||||| ||||| | | || Sbjct 1920 AAGTTCATCGCCGAGAAGTTCGCGGCCGGCGGCCCGGCCGGCGCCGACATCGCCCGCTCC 1861 Query 30143 ACCTTCGGGAATCGCTTCAAGATCGAGGACGGCAAGGTCGTCGCCTATGACGCCAACGGC 30202 ||| || ||||||| |||||||||| ||| | || || |||| |||| ||||| Sbjct 1860 CTGTTCTCCAACGCCTTCAAGGTCGAGGACGGGAAGCTGGTGGCGTATGGCGCCGACGGC 1801 Query 30203 AACAAGATCTTCAGCCGTGCGCGCCCGGGTGAGCTGGCCGACTTCGATGAAGCGCTGGAA 30262 | ||| ||| ||| | || | || |||| ||| ||||| ||| | || Sbjct 1800 CAGAAGCTCTATTCCCGCACCCGTCATGGCGAGCCCGCCTCGGCGGATGAGGCGATCGAG 1741 Query 30263 ACCCTCGTCGACGCTTATCCCCACAAAGACCACATCATAAAGGGCACTGGCGCCAACGGC 30322 ||||| ||| | || |||||||| | ||||||| | |||||||| || ||| ||| Sbjct 1740 CTGCTCGTTGACTCCTACCCCCACAAGGCCCACATCCTGAAGGGCACGGGGGCC---GGC 1684 Query 30323 GGCGGCGCTCCTACTGGTGGCGGT 30346 ||||||| | ||||| |||||| Sbjct 1683 GGCGGCGGGGCGACTGGCGGCGGT 1660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155603224869200