Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2855 123 6e-23 seq2860 120 7e-22 seq2352 107 4e-18 seq3097 89.7 1e-12 >seq2855 Length=35860 Score = 123 bits (136), Expect = 6e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||| |||| |||||| || |||||||| |||||||| || || || || | || ||| Sbjct 31860 CCATCCTCCAACTGCTTCCCGGCGAAGATGAGGCGTTGCTGCTCTGGGGGGATCCCCTCC 31919 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076 || ||||||||||| || || || ||||||||||| || || || || |||||| Sbjct 31920 TTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGACTGCTCCACATCCAGAGTG 31979 Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||||||| || ||||| || || ||||| || ||||| Sbjct 31980 ATCGTCTTCCCGGTGAGCGTTTTGACAAAGACTTGCAT 32017 >seq2860 Length=84313 Score = 120 bits (132), Expect = 7e-22 Identities = 170/251 (68%), Gaps = 41/251 (16%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || |||||||||||||| ||||||||||||||||| || |||||||| | |||||||| Sbjct 77458 ACGAGGTGAAGAGTGGATTCTTTTTGGATGTTATAGTCGGCAAGGGTTCGACCATCTTCA 77517 Query 210966 AGCTGCTTGCCTGCGAAGATA--------------------------------------- 210986 ||||| || || |||||||| Sbjct 77518 AGCTGTTTACCAGCGAAGATCTTAAAGTTGAAATATCTCAATGACAAAGTAATCAACAAA 77577 Query 210987 --AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 ||||| || || ||||| || | ||||| |||||||||||||| ||| ||||||| Sbjct 77578 CCAGGCGCTGCTGATCAGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTTT 77637 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || ||||| || ||| || || || ||||| ||||||||||| | |||||||||| Sbjct 77638 CAATAGTGTCTGATGCTTCCACTTCAAGGGTGATGGTCTTTCCCGTCAATGTCTTTACAA 77697 Query 211105 ACACCTGCATT 211115 | | ||||||| Sbjct 77698 AAATCTGCATT 77708 Score = 105 bits (116), Expect = 2e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || || || || ||||||| ||||||||||| || || ||| ||||| |||||||| Sbjct 78402 CGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATA 78461 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 || ||||| || || || ||||||||||||||||| || ||||||||||| || | | Sbjct 78462 GTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGATC 78521 Query 211110 TGCATTTT 211117 ||||| || Sbjct 78522 TGCATATT 78529 Score = 96.9 bits (106), Expect = 8e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049 || ||||| || || |||| |||||||||||||| || || ||| || |||||||| Sbjct 77314 CGCTGTTGATCTGGCGGAATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCGATA 77373 Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109 |||||||| ||||| ||||| ||||| ||||| || || ||||| || ||||| | Sbjct 77374 GTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAAGATT 77433 Query 211110 TGCATT 211115 |||||| Sbjct 77434 TGCATT 77439 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||||| | ||||| |||||||| || || || |||||||||||||| ||||| || Sbjct 77986 ACGAAGTCGCAACACAAGATGAAGAGTCGATTCCTTCTGGATGTTATAATCAGCAAGAGT 78045 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 | |||||| || ||||| || || |||||||| Sbjct 78046 ACGTCCATCCTCAAGCTGTTTACCAGCGAAGAT 78078 >seq2352 Length=49960 Score = 107 bits (118), Expect = 4e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || |||||||| || || |||| || || |||||||||||||| ||||| || || Sbjct 38170 AGACGTTGTTGATCGGGTGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCA 38229 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 || ||||| ||| || || || |||||||| |||||||||||||||||||| ||||| Sbjct 38230 ATAGTGTCCGAGGCCTCCACTTCAAGAGTGATAGTCTTTCCCGTGAGAGTCTTAACAAAA 38289 Query 211107 ACCTGCATT 211115 | |||||| Sbjct 38290 ATTTGCATT 38298 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 ||| || || ||||| || |||| || || |||||||| || || ||||||||||| Sbjct 37900 AAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCACGTTTTC 37959 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||| || || || |||||||| |||||||| || | |||||| ||||| Sbjct 37960 AATCGTGTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAACAAA 38019 Query 211106 CACCTGCATT 211115 | |||||| Sbjct 38020 AATTTGCATT 38029 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 ||| || || || || |||| ||||||||||| || || || ||| || || || || Sbjct 37631 GCGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAAT 37690 Query 211049 GGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACAC 211108 ||||||||| ||||| || |||||||| |||||||| || | ||| || ||||| | Sbjct 37691 AGTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAAGAT 37750 Query 211109 CTGCA 211113 ||||| Sbjct 37751 CTGCA 37755 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || |||||| | || ||||| || || || ||||| ||||| ||||||||||| ||||| Sbjct 37760 TCCACGAAGACGTAAAACAAGATGGAGTGTAGACTCCTTTTGAATGTTATAATCTGCAAG 37819 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 || | || ||||| ||||||||||| ||||| || Sbjct 37820 AGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAATAT 37855 >seq3097 Length=162332 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048 ||| |||||||| || |||| || |||||||| || || || || || ||||| || Sbjct 137008 GCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAAT 137067 Query 211049 GGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACAC 211108 ||||||||| |||||| || || || ||||| || || || | |||||| ||||| | Sbjct 137068 GGTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAAT 137127 Query 211109 CTGC--ATTTTATGGTTACTTGATG 211131 |||| |||| ||| || |||||| Sbjct 137128 CTGCATATTTGATGCTT--TTGATG 137150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159100761859250