Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29]
3,450 sequences; 53,012,960 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2855 123 6e-23
seq2860 120 7e-22
seq2352 107 4e-18
seq3097 89.7 1e-12
>seq2855
Length=35860
Score = 123 bits (136), Expect = 6e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016
||||| |||| |||||| || |||||||| |||||||| || || || || | || |||
Sbjct 31860 CCATCCTCCAACTGCTTCCCGGCGAAGATGAGGCGTTGCTGCTCTGGGGGGATCCCCTCC 31919
Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTG 211076
|| ||||||||||| || || || ||||||||||| || || || || ||||||
Sbjct 31920 TTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGACTGCTCCACATCCAGAGTG 31979
Query 211077 ATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|||||||| || ||||| || || ||||| || |||||
Sbjct 31980 ATCGTCTTCCCGGTGAGCGTTTTGACAAAGACTTGCAT 32017
>seq2860
Length=84313
Score = 120 bits (132), Expect = 7e-22
Identities = 170/251 (68%), Gaps = 41/251 (16%)
Strand=Plus/Plus
Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965
|| |||||||||||||| ||||||||||||||||| || |||||||| | ||||||||
Sbjct 77458 ACGAGGTGAAGAGTGGATTCTTTTTGGATGTTATAGTCGGCAAGGGTTCGACCATCTTCA 77517
Query 210966 AGCTGCTTGCCTGCGAAGATA--------------------------------------- 210986
||||| || || ||||||||
Sbjct 77518 AGCTGTTTACCAGCGAAGATCTTAAAGTTGAAATATCTCAATGACAAAGTAATCAACAAA 77577
Query 210987 --AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044
||||| || || ||||| || | ||||| |||||||||||||| ||| |||||||
Sbjct 77578 CCAGGCGCTGCTGATCAGGTGGGATCCCTTCTTTGTCCTGGATCTTGGCTTTGACGTTTT 77637
Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104
| || ||||| || ||| || || || ||||| ||||||||||| | ||||||||||
Sbjct 77638 CAATAGTGTCTGATGCTTCCACTTCAAGGGTGATGGTCTTTCCCGTCAATGTCTTTACAA 77697
Query 211105 ACACCTGCATT 211115
| | |||||||
Sbjct 77698 AAATCTGCATT 77708
Score = 105 bits (116), Expect = 2e-17
Identities = 100/128 (78%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049
|| || || || ||||||| ||||||||||| || || ||| ||||| ||||||||
Sbjct 78402 CGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATA 78461
Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109
|| ||||| || || || ||||||||||||||||| || ||||||||||| || | |
Sbjct 78462 GTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGATC 78521
Query 211110 TGCATTTT 211117
||||| ||
Sbjct 78522 TGCATATT 78529
Score = 96.9 bits (106), Expect = 8e-15
Identities = 97/126 (77%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 210990 CGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATG 211049
|| ||||| || || |||| |||||||||||||| || || ||| || ||||||||
Sbjct 77314 CGCTGTTGATCTGGCGGAATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTCGATA 77373
Query 211050 GTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACC 211109
|||||||| ||||| ||||| ||||| ||||| || || ||||| || ||||| |
Sbjct 77374 GTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAAGATT 77433
Query 211110 TGCATT 211115
||||||
Sbjct 77434 TGCATT 77439
Score = 87.8 bits (96), Expect = 4e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||||| | ||||| |||||||| || || || |||||||||||||| ||||| ||
Sbjct 77986 ACGAAGTCGCAACACAAGATGAAGAGTCGATTCCTTCTGGATGTTATAATCAGCAAGAGT 78045
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985
| |||||| || ||||| || || ||||||||
Sbjct 78046 ACGTCCATCCTCAAGCTGTTTACCAGCGAAGAT 78078
>seq2352
Length=49960
Score = 107 bits (118), Expect = 4e-18
Identities = 101/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046
|| |||||||| || || |||| || || |||||||||||||| ||||| || ||
Sbjct 38170 AGACGTTGTTGATCGGGTGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCA 38229
Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106
|| ||||| ||| || || || |||||||| |||||||||||||||||||| |||||
Sbjct 38230 ATAGTGTCCGAGGCCTCCACTTCAAGAGTGATAGTCTTTCCCGTGAGAGTCTTAACAAAA 38289
Query 211107 ACCTGCATT 211115
| ||||||
Sbjct 38290 ATTTGCATT 38298
Score = 91.5 bits (100), Expect = 3e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045
||| || || ||||| || |||| || || |||||||| || || |||||||||||
Sbjct 37900 AAGACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCACGTTTTC 37959
Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105
|| ||||| ||| || || || |||||||| |||||||| || | |||||| |||||
Sbjct 37960 AATCGTGTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAACAAA 38019
Query 211106 CACCTGCATT 211115
| ||||||
Sbjct 38020 AATTTGCATT 38029
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048
||| || || || || |||| ||||||||||| || || || ||| || || || ||
Sbjct 37631 GCGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAAT 37690
Query 211049 GGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACAC 211108
||||||||| ||||| || |||||||| |||||||| || | ||| || ||||| |
Sbjct 37691 AGTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAAGAT 37750
Query 211109 CTGCA 211113
|||||
Sbjct 37751 CTGCA 37755
Score = 84.2 bits (92), Expect = 5e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| |||||| | || ||||| || || || ||||| ||||| ||||||||||| |||||
Sbjct 37760 TCCACGAAGACGTAAAACAAGATGGAGTGTAGACTCCTTTTGAATGTTATAATCTGCAAG 37819
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985
|| | || ||||| ||||||||||| ||||| ||
Sbjct 37820 AGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAATAT 37855
>seq3097
Length=162332
Score = 89.7 bits (98), Expect = 1e-12
Identities = 108/145 (74%), Gaps = 4/145 (3%)
Strand=Plus/Plus
Query 210989 GCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT 211048
||| |||||||| || |||| || |||||||| || || || || || ||||| ||
Sbjct 137008 GCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAAT 137067
Query 211049 GGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACAC 211108
||||||||| |||||| || || || ||||| || || || | |||||| ||||| |
Sbjct 137068 GGTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAAT 137127
Query 211109 CTGC--ATTTTATGGTTACTTGATG 211131
|||| |||| ||| || ||||||
Sbjct 137128 CTGCATATTTGATGCTT--TTGATG 137150
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159100761859250
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |