Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2860 93.3 3e-14 seq1807 91.5 1e-13 seq2352 89.7 3e-13 >seq2860 Length=84313 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || ||||| || || || || || ||||| ||||||||||| | | Sbjct 77439 AATGCAAATCTTTGTGAAAACTCTGACAGGGAAGACTATCACCCTCGAAGTTGAGGCATC 77380 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | ||| |||||| ||||| |||||| | ||||||||||| Sbjct 77379 TGACACTATCGAAAATGTCAAAGCCAAAATTCAGGACAAGGAAGGTATTCCGCCAGATCA 77320 Query 23730 ACAGCGTTT 23738 ||||||||| Sbjct 77319 ACAGCGTTT 77311 >seq1807 Length=32432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 23596 AATTAATTACTTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTC 23655 |||||| | | || ||||||||||| || || || ||||| |||||||| || || ||| Sbjct 20965 AATTAAGCATTAAATATGCAGATTTTTGTCAAGACTCTCACCGGAAAAACTATTACACTC 21024 Query 23656 GAAGTTGACTCCACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGG 23714 |||||||| | | || ||| ||| |||| |||| | |||||| || || || || Sbjct 21025 GAAGTTGAGGCTTCTGATACTATTGAAAATGTTAAGGC-CAAAATTCAAGATAAGGAGGG 21083 Query 23715 TGTACCGCCAGATCAACAGCGTTT 23738 | ||||| |||||||||||||| Sbjct 21084 CATCCCGCCTGATCAACAGCGTTT 21107 >seq2352 Length=49960 Score = 89.7 bits (98), Expect = 3e-13 Identities = 98/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 23612 TGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGG 23671 ||||||| || || ||||| | || ||||| || |||||||| |||||||| || | | Sbjct 37755 TGCAGATCTTTGTGAAAACTTTGACTGGAAAGACCATCACTCTTGAAGTTGAGGCCTCTG 37696 Query 23672 ACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| ||| | ||| | |||| || ||||| ||||| | ||||||||||| Sbjct 37695 ACACTATTGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAAGGCATTCCGCCAGATCAG 37637 Query 23731 CAGCGTTT 23738 ||||| || Sbjct 37636 CAGCGCTT 37629 Score = 84.2 bits (92), Expect = 1e-11 Identities = 97/128 (76%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || ||||||||||| || |||||||| ||||| || || | Sbjct 38298 AATGCAAATTTTTGTTAAGACTCTCACGGGAAAGACTATCACTCTTGAAGTGGAGGCCTC 38239 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||||| |||| ||| | || | || || |||||||| || | || || |||| Sbjct 38238 GGACACTATTGAGAATGTGAAGGC-TAAGATCCAGGACAAAGAGGGCATTCCACCCGATC 38180 Query 23729 AACAGCGT 23736 |||| ||| Sbjct 38179 AACAACGT 38172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337995387752600