Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2855 122 2e-22 seq3097 91.5 4e-13 seq2860 89.7 1e-12 seq2352 89.7 1e-12 >seq2855 Length=35860 Score = 122 bits (134), Expect = 2e-22 Identities = 135/180 (75%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 225534 ATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTG 225593 |||||| || ||||| |||| ||||| || | ||||||||| |||||||| || ||||| Sbjct 31838 ATTGTAGTCAGCCAACGTTCGACCATCCTCCAACTGCTTCCCGGCGAAGATGAGGCGTTG 31897 Query 225594 TTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTC 225653 || || || || || || ||||| || |||||||| ||| ||| ||||||||||| Sbjct 31898 CTGCTCTGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC 31957 Query 225654 TGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || ||||| || | ||||||||||| || || | ||||| | || |||||||| Sbjct 31958 CGACTGCTCCACATCCAGAGTGATCGTCTTCCCGGTGAGCGTTTTGACAAAGACTTGCAT 32017 >seq3097 Length=162332 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || |||||||| ||||||||||| ||||||||||| || || ||| ||| ||| ||| Sbjct 137009 CGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATG 137068 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 ||||| || | ||| || || | ||| ||||| ||||| || ||||| || | || | Sbjct 137069 GTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAATC 137128 Query 225709 TGCATTTT 225716 ||||| || Sbjct 137129 TGCATATT 137136 >seq2860 Length=84313 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225588 TCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGAT 225647 ||| || || || || ||||| |||||||||||||| || ||| ||||||| |||||| Sbjct 78401 TCGCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGAT 78460 Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707 || || || | ||||| || | ||||||||||| || || | ||| |||| ||| | Sbjct 78461 AGTATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGAT 78520 Query 225708 TTGCATTTT 225716 ||||| || Sbjct 78521 CTGCATATT 78529 Score = 87.8 bits (96), Expect = 4e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TTCACAGCTTCGAT 225647 || ||||| || |||||||||||||||||||| || || ||| || || ||| |||||| Sbjct 77314 CGCTGTTGATCTGGCGGAATACCTTCCTTGTCCTGAAT-TTTGGCTTTGACATTTTCGAT 77372 Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707 ||||| || | || || || | ||||| ||||| || |||| |||||| | || | Sbjct 77373 AGTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAAGAT 77432 Query 225708 TTGCATT 225714 ||||||| Sbjct 77433 TTGCATT 77439 >seq2352 Length=49960 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATG 225648 || || ||||| ||||| ||||| ||||||||||| || || ||| ||| ||| ||| Sbjct 38443 CGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATG 38502 Query 225649 GTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACT 225708 || || |||| ||| || || | ||||| ||||| || ||||| ||||| | ||| | Sbjct 38503 GTATCAGAGGCTTCAACTTCAAGAGTGATAGTCTTTCCAGTCAACGTTTTCACGAAGATC 38562 Query 225709 TGCATTTTA 225717 ||||| ||| Sbjct 38563 TGCATATTA 38571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192478486394300