Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq1894 147 3e-30 seq1983 91.5 2e-13 >seq1894 Length=37626 Score = 147 bits (162), Expect = 3e-30 Identities = 300/450 (67%), Gaps = 52/450 (12%) Strand=Plus/Minus Query 48122 CAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAA 48181 |||||||| || | |||||| |||||||| | ||||||||||||||| | | |||||| Sbjct 18198 CAAATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTAA 18139 Query 48182 TTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGC 48241 ||| ||| ||| | || ||||| || |||||||| || | |||||| ||||| || Sbjct 18138 TTCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAGC 18079 Query 48242 GAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTA 48301 ||| |||||| || ||||| ||||| || | |||||||| |||| | ||||| | Sbjct 18078 AAAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCC--A 18021 Query 48302 ACTG--GCTTCGT---TGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAA 48356 | || ||||| | || |||| || | |||||||||||||| ||||| | | || Sbjct 18020 AATGAAGCTTCTTTACTGGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATA-AA 17962 Query 48357 GGCATTGTTTC---TATAGCATT----------------AAAGAGAAAGttttt------ 48391 | || ||| |||||| || ||| ||||| || || Sbjct 17961 GTCA--AATTCAAATATAGCGTTGAACAATCTTGCACTGAAAAAGAAAATTATTTAATAA 17904 Query 48392 -----------------ttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 |||| | |||||||| |||||||| ||||| |||| Sbjct 17903 TTAAAAAAAGAGTACCGTTCAGTTGAATCTTTAATATAAGTATCAATTAATTTTGAATAC 17844 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTG 48494 ||||| || |||||||| ||||| || || ||||| || |||||||| | ||||||| Sbjct 17843 ATTTCTGAATGAATATTCTCAATGGCTATTTGAAAGCCATAAAAACAACGAGCTTCTGGT 17784 Query 48495 ATCTGTACCTCCGTACAAAATCGTTCAGCC 48524 || || || ||| | ||| |||||| || Sbjct 17783 ATTTGCACTTCCTGAGCAAAACGTTCAACC 17754 >seq1983 Length=15124 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 78488 TTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATT 78547 || ||| ||||| || || |||||||| ||||||||||| || || ||||| || Sbjct 8464 TTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTCTCAACTACTTTTCC 8405 Query 78548 ATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA-TGAAA 78606 ||| ||| ||| | ||| || ||| | |||||||| |||||||| |||| ||||| Sbjct 8404 ATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAATAAGTGTAGTGAAA 8345 Query 78607 AGTCTCTCTCGTAAATAATAACAGAATTTAGTTT 78640 | || | || |||||||| || ||||| ||||| Sbjct 8344 A-TCACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 91.5 bits (100), Expect = 2e-13 Identities = 187/276 (68%), Gaps = 9/276 (3%) Strand=Plus/Minus Query 76812 GTACGTAGATAGTACATACCAGTTTTTA--GACCCAGACTCCATCCGTAGAAATGCATGC 76869 ||||| | ||||||||| |||||||| | |||| ||| | |||||||||| Sbjct 11414 GTACGCAAATAGTACATTCCAGTTTTGATGGACCATTTTCCCAAGCAAAGAAATGCATTG 11355 Query 76870 TTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 76929 || | ||| | ||| | ||||| || ||||| | ||| | || ||||||||||| | Sbjct 11354 AAGTAATTTTTGCATAGGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGATCAA 11295 Query 76930 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 76989 | |||| ||| || ||||| || || || ||| ||||||||||||| || Sbjct 11294 TAAAAGGAGCTCGGTCTATAGCCATATTGATGATTTCACGTTGTGGAATTTCCCAAACAG 11235 Query 76990 TTTTGAAAACTTGTTTGATATCATCTGG-----AAGGTTTGTATTTTGAATGGAACCACC 77044 ||||| | | |||||| || ||||| ||| || ||||||| |||||||| Sbjct 11234 TTTTGTAGAGAGCTTTGATTTCCTCTGGTAATCCAGGAATG--TTTTGAACAGAACCACC 11177 Query 77045 ATCTGATATAATTGTATTCTTTATATCATCATTCCA 77080 || ||||| | |||| | || | |||||||| Sbjct 11176 GTCAGATATTAAACGATTCCTCATTTGCTCATTCCA 11141 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 |||||||| | ||||||| ||||||||| ||| ||||| || || ||||| || ||| Sbjct 9932 TCAAATTCCTTTCCCCAACAATCATCCAAGTTAGGACATTCGTTAGGACACATTAAAGAC 9873 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAA 78016 || |||||||| ||| | |||||||||||||| Sbjct 9872 CAATCACCATCATCCCTCACTCGTTTCATAAA 9841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694638842408000