Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1894 141 1e-28 seq1983 104 3e-17 >seq1894 Length=37626 Score = 141 bits (156), Expect = 1e-28 Identities = 303/449 (67%), Gaps = 54/449 (12%) Strand=Plus/Minus Query 46610 TCAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTA 46669 ||||||||| || | |||||| |||||||| | |||||| |||||||| | | ||||| Sbjct 18199 TCAAATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATTA 18140 Query 46670 ATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCG 46729 |||| ||| ||| | |||||||| || ||||| || || | |||||| || || | Sbjct 18139 ATTCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCAG 18080 Query 46730 CGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGT 46789 | ||| |||||| || ||||| ||||| || | || ||||| | ||| | ||||| Sbjct 18079 CAAAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCC-- 18022 Query 46790 AACTG--GCATCATTA-TG--AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACA 46844 || || || || ||| || | |||| | |||||||||||||||||||||| | | | Sbjct 18021 AAATGAAGCTTCTTTACTGGCAGTCCAACGAAGAGCCCAATCAGCCTTTTTCTTGATA-A 17963 Query 46845 AGGCATTGTTTC---TATAGCATT----------------AAAGAGAAAGtttttt--tC 46883 || || ||| |||||| || ||| ||||| || ||| | Sbjct 17962 AGTCA--AATTCAAATATAGCGTTGAACAATCTTGCACTGAAAAAGAAAATTATTTAATA 17905 Query 46884 A------------------TCACT---ATCTTTAACATATGTATCTATTAAAAGACTATA 46922 | ||| | |||||||| ||| ||||| ||||| ||| Sbjct 17904 ATTAAAAAAAGAGTACCGTTCAGTTGAATCTTTAATATAAGTATCAATTAATTTTGAATA 17845 Query 46923 CATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGT 46982 ||||||||||||||| || ||||| || || ||||| || |||||||| | ||||| | Sbjct 17844 CATTTCTGAATGAATATTCTCAATGGCTATTTGAAAGCCATAAAAACAACGAGCTTCTGG 17785 Query 46983 AATCTGTACCT-CTGTACAAAATCGTTCA 47010 || || || | ||| ||||| |||||| Sbjct 17784 TATTTGCACTTCCTGAGCAAAA-CGTTCA 17757 Score = 87.8 bits (96), Expect = 3e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 47122 ATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATA 47181 || ||||| || || | |||||||| || || | ||||| ||||| | | ||| || Sbjct 17557 ATTTCTACCTCCTCTACAGTCCAGAAAGAAGCGACGGCTTTCTTATAAAATTGCCAAATG 17498 Query 47182 TCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||| |||||| |||||||||||||||||| | ||||||||||| Sbjct 17497 TCATGATATTTGATCGGAAAAATAACAAAACGATTTGGATTTT 17455 >seq1983 Length=15124 Score = 104 bits (114), Expect = 3e-17 Identities = 198/289 (69%), Gaps = 2/289 (1%) Strand=Plus/Minus Query 76747 TTTATTACCTCCCTGATCTATATATC-TGGCAGTGTTATTATAAACTCTCAACATTGGAA 76805 |||||| ||||| ||||| ||||| | || || | |||| ||||| ||||| || | Sbjct 9153 TTTATTCCCTCCTTGATCAATATAACGTGCCACAGA-ATTAAAAACTTGTAACATCGGTA 9095 Query 76806 TAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTAC 76865 |||| || ||||| | |||||||| ||||| || || ||| |||||||| | Sbjct 9094 TAATTCCATTAGAATTTCCATTTGTGCCAGATATCAAAGAACCAGCAGCACGAATTGAAT 9035 Query 76866 TAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGT 76925 ||| || || || |||||||| ||| ||| || || ||||| || || | ||| | Sbjct 9034 GAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATATGCACAACGATTAATTGTTT 8975 Query 76926 CATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGAT 76985 || | || || || || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 8974 CAAAAATTCCTTCAATTGAGTCACCAACCATTGAAAGTAAAAAACAAGAAGAAAGTTGTG 8915 Query 76986 GATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCA 77034 || | || || ||||| || || || ||||| || ||||||||||| Sbjct 8914 GACGTTTTGTACCCGCATTGAATAAAGTTGGAGAAGCGTGAGTGAACCA 8866 Score = 95.1 bits (104), Expect = 2e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| | ||||||| ||||||||| ||||||||| || |||||||| || ||| Sbjct 9932 TCAAATTCCTTTCCCCAACAATCATCCAAGTTAGGACATTCGTTAGGACACATTAAAGAC 9873 Query 76580 CACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || |||||||| ||| | || ||||||||||| Sbjct 9872 CAATCACCATCATCCCTCACTCGTTTCATAAA 9841 Score = 89.7 bits (98), Expect = 7e-13 Identities = 122/168 (73%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 77069 GCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGT 77128 || || ||||| || ||| ||||| ||||| |||||||| ||||||||||| || | Sbjct 8478 GCCTCAATATCAGTTTTATGTATTCCAACAGCAACACGCATTAACATATGCTGTGGCCTC 8419 Query 77129 TCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAA 77188 || || || ||| ||| ||| | ||| || ||| | |||||||| |||||| Sbjct 8418 TCAACTACTTTTCCATTAATTCGCAAAAGGTAAGAGCGTTCAAGTGTTTTAAAGCCAAAA 8359 Query 77189 TAGTTGTA-TGAAAAGTCTCTTTCGTAAATAATAACCGAATTTAGTTT 77235 || |||| |||||| || | || |||||||| || ||||| ||||| Sbjct 8358 TAAGTGTAGTGAAAA-TCACGATCATAAATAATTACTGAATTGAGTTT 8312 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/274 (67%), Gaps = 5/274 (2%) Strand=Plus/Minus Query 75407 GTACGTAGATAGTACATACCAGTTTTTA--GACCCAGACTCCATCCGTAGAAATGCATGC 75464 ||||| | ||||||||| |||||||| | |||| ||| | |||||||||| Sbjct 11414 GTACGCAAATAGTACATTCCAGTTTTGATGGACCATTTTCCCAAGCAAAGAAATGCATTG 11355 Query 75465 TTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTTTGATCGA 75524 || | ||| | ||| | ||||| || ||||| | ||| | || ||||||||||| | Sbjct 11354 AAGTAATTTTTGCATAGGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGATCAA 11295 Query 75525 TGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAG 75584 | |||| ||| || ||||| || || || ||| ||||||||||||| || Sbjct 11294 TAAAAGGAGCTCGGTCTATAGCCATATTGATGATTTCACGTTGTGGAATTTCCCAAACAG 11235 Query 75585 TTTTGAAAACTTGTTTGATATCATCTGGAA---GATTTGTATTTTGAATGGATCCGCCAT 75641 ||||| | | |||||| || ||||| | | | ||||||| || || || | Sbjct 11234 TTTTGTAGAGAGCTTTGATTTCCTCTGGTAATCCAGGAATGTTTTGAACAGAACCACCGT 11175 Query 75642 CAGATATAATTGTATTCTTGATCTCATCATTCCA 75675 ||||||| | |||| | || | |||||||| Sbjct 11174 CAGATATTAAACGATTCCTCATTTGCTCATTCCA 11141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712903654704000