Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2352 89.7 1e-12 seq2855 86.0 1e-11 seq3097 84.2 5e-11 seq2860 84.2 5e-11 >seq2352 Length=49960 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||||||||||| || ||| || ||||| ||||||||||| |||||| | || | | | Sbjct 38445 CTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGT 38504 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || || || ||||||||||| ||||| || || || | || |||||||||| ||| Sbjct 38505 ATCAGAGGCTTCAACTTCAAGAGTGATAGTCTTTCCAGTCAACGTTTTCACGAAGATCTG 38564 Query 152102 CATTTTA 152108 ||| ||| Sbjct 38565 CATATTA 38571 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | || || |||||||| ||||||||||| ||||||| |||| | | Sbjct 37634 CTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATAGT 37693 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| || ||| ||||||||||| || || || || || | ||| ||||| |||| ||| Sbjct 37694 GTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTTCACAAAGATCTG 37753 Query 152102 CA 152103 || Sbjct 37754 CA 37755 >seq2855 Length=35860 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 151920 TGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGC 151979 || || ||||| || || || |||| ||||| || | |||||||||||||| || Sbjct 31833 TGAATATTGTAGTCAGCCAACGTTCGACCATCCTCCAACTGCTTCCCGGCGAAGATGAGG 31892 Query 151980 CTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACG 152039 | ||||| || | | ||| || ||||| || || || || |||||| |||| | | Sbjct 31893 CGTTGCTGCTCTGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 31952 Query 152040 CTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACC 152099 |||| || ||| || || ||||| || || || || ||||| || || || ||||| Sbjct 31953 GTGTCCGACTGCTCCACATCCAGAGTGATCGTCTTCCCGGTGAGCGTTTTGACAAAGACT 32012 Query 152100 TGCAT 152104 ||||| Sbjct 32013 TGCAT 32017 >seq3097 Length=162332 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 ||| ||||| | || || || ||||| ||||||||||| |||||| | || | | | Sbjct 137011 CTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTCAATGGT 137070 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 ||| ||| || |||||||| ||||| |||||||| || | |||||| || || | ||| Sbjct 137071 GTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAAAATCTG 137130 Query 152102 CATTTT 152107 ||| || Sbjct 137131 CATATT 137136 >seq2860 Length=84313 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 151982 CTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCT 152041 |||||| || | | || |||||||| |||||||||||| || ||| | || | | Sbjct 78404 CTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATAGT 78463 Query 152042 GTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTG 152101 || ||| ||| ||||||||||| || || || || || |||||||| ||||||| ||| Sbjct 78464 ATCAGAAGCCTCCACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGATCTG 78523 Query 152102 CATTTT 152107 ||| || Sbjct 78524 CATATT 78529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153769797514950