Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq3097 116 8e-21 seq2855 113 9e-20 seq2352 113 9e-20 seq2860 109 1e-18 >seq3097 Length=162332 Score = 116 bits (128), Expect = 8e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 ||| || |||||||| ||||||||||||||||||||| || || || || || | || Sbjct 137005 CAAGCGCTGTTGGTCTGGCGGAATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTC 137064 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || ||||| |||||||| ||||| || || ||||| || || || ||||||||||| || Sbjct 137065 AATGGTGTCAGAAGCTTCAACTTCAAGCGTAATCGTTTTGCCGGTTAAAGTCTTAACAAA 137124 Query 283091 TATCTGCATTTT 283102 |||||||| || Sbjct 137125 AATCTGCATATT 137136 >seq2855 Length=35860 Score = 113 bits (124), Expect = 9e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 282915 TGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAA 282974 || || ||||||||||| | ||| || |||||||| | || |||||||| ||||| | Sbjct 31833 TGAATATTGTAGTCAGCCAACGTTCGACCATCCTCCAACTGCTTCCCGGCGAAGATGAGG 31892 Query 282975 CGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATA 283034 ||||| || || || || |||||||| || |||||||| || || || | ||||| Sbjct 31893 CGTTGCTGCTCTGGGGGGATCCCCTCCTTCTCCTGGATCTTGGCCTTGACATTCTCGATG 31952 Query 283035 GTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATC 283094 |||||||| || || || |||||||||||||| || || | || || || || | Sbjct 31953 GTGTCCGACTGCTCCACATCCAGAGTGATCGTCTTCCCGGTGAGCGTTTTGACAAAGACT 32012 Query 283095 TGCAT 283099 ||||| Sbjct 32013 TGCAT 32017 >seq2352 Length=49960 Score = 113 bits (124), Expect = 9e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 || ||||||||| || ||||| ||||| ||||| |||||||| || || || | || Sbjct 38169 CAGACGTTGTTGATCGGGTGGAATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTC 38228 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||||||||||| || || ||||| |||||||| ||||| ||||| | ||||||||| || Sbjct 38229 AATAGTGTCCGAGGCCTCCACTTCAAGAGTGATAGTCTTTCCCGTGAGAGTCTTAACAAA 38288 Query 283091 TATCTGCATT 283100 || |||||| Sbjct 38289 AATTTGCATT 38298 Score = 107 bits (118), Expect = 4e-18 Identities = 100/127 (79%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 282974 ACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT 283033 ||| || ||||| |||||| ||||| ||||| || || || || || ||| | || || Sbjct 37903 ACGCTGCTGGTCTGGCGGAATCCCCTCTTTGTCCTGAATTTTGGCCTTCACGTTTTCAAT 37962 Query 283034 AGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATAT 283093 |||||||| || || ||||| |||||||| ||||| || |||||||||||||| || || Sbjct 37963 CGTGTCCGAGGCCTCTACTTCAAGAGTGATGGTCTTTCCGGTCAAAGTCTTAACAAAAAT 38022 Query 283094 CTGCATT 283100 |||||| Sbjct 38023 TTGCATT 38029 Score = 104 bits (114), Expect = 5e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 ||| || || ||||| ||| ||||||||||||||||| || || || || || | || Sbjct 38439 CAAGCGCTGCTGGTCCGGCGGGATACCCTCCTTGTCTTGAATTTTAGCCTTGACATTTTC 38498 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 || || || || ||||| ||||| |||||||| ||||| || ||||| || || ||||| Sbjct 38499 AATGGTATCAGAGGCTTCAACTTCAAGAGTGATAGTCTTTCCAGTCAACGTTTTCACGAA 38558 Query 283091 TATCTGCATTTT 283102 |||||||| || Sbjct 38559 GATCTGCATATT 38570 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 282965 AAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTAC 283024 ||| | ||| || || || || |||||| || ||||||||||| || || ||||| || Sbjct 37622 AAAAACCAAGCGCTGCTGATCTGGCGGAATGCCTTCCTTGTCTTGAATTTTGGCTTTGAC 37681 Query 283025 GGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTT 283084 | || |||||||| || || || ||||| |||||||| ||||| || |||||||| || Sbjct 37682 ATTCTCAATAGTGTCAGAGGCCTCAACTTCAAGAGTGATGGTCTTTCCAGTCAAAGTTTT 37741 Query 283085 AACGAATATCTGCA 283098 || || ||||||| Sbjct 37742 CACAAAGATCTGCA 37755 >seq2860 Length=84313 Score = 109 bits (120), Expect = 1e-18 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 282971 CAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATC 283030 |||||| ||||| || ||||||||| |||||||| || || || ||||| || | || Sbjct 77310 CAAACGCTGTTGATCTGGCGGAATACCTTCCTTGTCCTGAATTTTGGCTTTGACATTTTC 77369 Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090 ||||||||| || || || |||||||| ||||| ||||| || |||| ||| || || || Sbjct 77370 GATAGTGTCAGATGCCTCAACTTCGAGGGTGATAGTCTTCCCTGTCAGAGTTTTCACAAA 77429 Query 283091 TATCTGCATT 283100 || |||||| Sbjct 77430 GATTTGCATT 77439 Score = 109 bits (120), Expect = 1e-18 Identities = 92/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 282990 GGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCG 283049 ||||| || ||||||||||| || ||||| || || | |||||||| || ||||| || Sbjct 78417 GGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATAGTATCAGAAGCCTCC 78476 Query 283050 ACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 ||||| |||||||||||||| || || | |||||| ||||| |||||||| || Sbjct 78477 ACTTCAAGAGTGATCGTCTTTCCGGTAAGAGTCTTTACGAAGATCTGCATATT 78529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046692930856300