Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq1894 129 6e-25 seq1463 91.5 2e-13 >seq1894 Length=37626 Score = 129 bits (142), Expect = 6e-25 Identities = 175/244 (72%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 23428 TTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATAT 23487 ||||| || |||||| ||||||||||||| ||||| ||| ||| ||| | Sbjct 18260 TTTTCGATATCAACAGCCTCTTTAATTATTTCTTCAATACGTTCAATACTCGGTTTGTTA 18201 Query 23488 TTTAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATC 23547 || |||| | || | |||||| |||||||| | ||| || |||||||| | | ||| Sbjct 18200 TTCAAATGTTGGAAAAGTAAACAAGCAAAATCCCGATGAAGACCTTCATCACGAGAAATT 18141 Query 23548 AATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCA 23607 ||||||||| ||| ||||| ||||| | || ||||| || | |||||| |||||| Sbjct 18140 AATTCATTACTTTGTGTCAATCCAGGCATAAGACCACGTTTCTTCAACCAAAAAATTGCA 18081 Query 23608 GCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCA 23667 ||||| ||| || || || || || ||||| | ||||| || | ||||||| ||| Sbjct 18080 GCAAAACTTCCAGAGAAAAATATTCCTTCAACTGAAGCAAATGCAATAAGACGTTCTCCA 18021 Query 23668 AATG 23671 |||| Sbjct 18020 AATG 18017 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 |||| | ||||| |||||||||| | ||||||||| ||||||||||| ||||| || Sbjct 17877 ATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATATTCTCAATGGC 17818 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTC 23861 || ||||| ||||||||||| | |||||| Sbjct 17817 TATTTGAAAGCCATAAAAACAACGAGCTTC 17788 >seq1463 Length=17567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 139438 CATACAAAATTTTGGATTGTTGATAATAAACATATATATATTGGAAGTGCTAACATGGAC 139497 |||| ||| ||||||||||||| || ||||| | ||| | || |||||| ||||| Sbjct 9060 CATAGCAAACTTTGGATTGTTGACAACCAACATTTTTATTTAGGTTCTGCTAATATGGAT 9119 Query 139498 TGGCGATCACTAACTCAAGTAAAAGAATTAGGTATCACAATTTATAATAATTCTTGTATT 139557 |||| |||| ||||| |||| |||||||| || || ||| | ||| ||||||| | Sbjct 9120 TGGCAATCATTAACTGAAGTTAAAGAATTGGGAATTTTAATAAAAAATTGTTCTTGTCTA 9179 Query 139558 GCTAGTGAACTAATGAAAATATTTA 139582 ||| | ||| | | ||||| |||| Sbjct 9180 GCTTGGGAATTTAACAAAATTTTTA 9204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521465510830000