Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2855 118 3e-21 seq2860 116 9e-21 seq2352 91.5 4e-13 >seq2855 Length=35860 Score = 118 bits (130), Expect = 3e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||| | || || ||||| ||||| || || |||||||| || || ||||| || ||| Sbjct 32014 CAAGTCTTTGTCAAAACGCTCACCGGGAAGACGATCACTCTGGATGTGGAGCAGTCGGAC 31955 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| ||||| || || || ||||| || || |||||| Sbjct 31954 ACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCAGAGCAGCAA 31895 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||||||||| || ||| | || ||||| Sbjct 31894 CGCCTCATCTTCGCCGGGAAGCAGTTGGAGGATGG 31860 >seq2860 Length=84313 Score = 116 bits (128), Expect = 9e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || |||||||| || || ||||| || ||||||||||| |||||| || || Sbjct 77976 CAAATCTTTGTGAAAACGCTTACTGGAAAGACCATCACCCTCGAAGTGGAAGCTTCCGAT 77917 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| |||||| ||| ||||| |||||||| || ||||||||||| ||||| Sbjct 77916 ACGATCGAGAATGTCAAAGCAAAAATTCAAGACAAAGAGGGGATCCCTCCGGATCAGCAG 77857 Query 178044 CG 178045 || Sbjct 77856 CG 77855 Score = 113 bits (124), Expect = 1e-19 Identities = 173/257 (67%), Gaps = 41/257 (16%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || | || ||||| || |||||||| || |||||| |||||| Sbjct 77704 CAGATTTTTGTAAAGACATTGACGGGAAAGACCATCACCCTTGAAGTGGAAGCATCAGAC 77645 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||||||| ||||| |||||||||||||| ||||| || || ||||| Sbjct 77644 ACTATTGAAAACGTCAAAGCCAAGATCCAGGACAAAGAAGGGATCCCACCTGATCAGCAG 77585 Query 178044 CG---------------ACTT--------------------------ATCTTCGCCGGAA 178062 || |||| |||||||| || | Sbjct 77584 CGCCTGGTTTGTTGATTACTTTGTCATTGAGATATTTCAACTTTAAGATCTTCGCTGGTA 77525 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 ||||||| |||||||| | || |||||||| |||||| ||||||||||||| || || | Sbjct 77524 AACAGCTTGAAGATGGTCGAACCCTTGCCGACTATAACATCCAAAAAGAATCCACTCTTC 77465 Query 178123 ATCTTGTTTTGAGACTC 178139 | || |||||| | ||| Sbjct 77464 ACCTCGTTTTGCGTCTC 77448 Score = 111 bits (122), Expect = 4e-19 Identities = 173/259 (67%), Gaps = 44/259 (17%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || || ||||| ||||| ||||| || || || ||| Sbjct 78248 CAGATTTTCGTCAAGACGCTTACTGGGAAAACCATCACGCTCGAAGTTGAGTCTTCCGAC 78189 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| |||||||| || |||||||| |||||||||||||| || || || |||||| Sbjct 78188 ACCATTGAGAACGTTAAGGCCAAGATTCAAGACAAAGAAGGAATTCCACCTGATCAGCAA 78129 Query 178044 CGA-----------CTT---------------------------------ATCTTCGCCG 178059 ||| ||| |||||||| | Sbjct 78128 CGATTGGTTTTCATCTTTTTATTTATTTGGTTCTCAAACTCAATTTTTAGATCTTCGCTG 78069 Query 178060 GAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACAC 178119 | |||||||| || |||||| | |||||||| ||||||||| |||| || ||||| || | Sbjct 78068 GTAAACAGCTTGAGGATGGACGTACTCTTGCTGATTATAACATCCAGAAGGAATCGACTC 78009 Query 178120 TGCATCTTGTTTTGAGACT 178138 | |||||||| ||| |||| Sbjct 78008 TTCATCTTGTGTTGCGACT 77990 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || ||||||||||| ||||| || || ||||||||||| || || || ||| Sbjct 77435 CAAATCTTTGTGAAAACTCTGACAGGGAAGACTATCACCCTCGAAGTTGAGGCATCTGAC 77376 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || |||||| || ||||||||||| ||||| || || || || || || Sbjct 77375 ACTATCGAAAATGTCAAAGCCAAAATTCAGGACAAGGAAGGTATTCCGCCAGATCAACAG 77316 Query 178044 CG 178045 || Sbjct 77315 CG 77314 >seq2352 Length=49960 Score = 91.5 bits (100), Expect = 4e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || |||||||| ||||| || ||||| || || ||||| ||| ||| Sbjct 38294 CAAATTTTTGTTAAGACTCTCACGGGAAAGACTATCACTCTTGAAGTGGAGGCCTCGGAC 38235 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| ||||||||||| || || || || || || ||| Sbjct 38234 ACTATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATTCCACCCGATCAACAA 38175 Query 178044 CGACT 178048 || || Sbjct 38174 CGTCT 38170 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| | || ||||| || ||||| || || || ||| ||| || Sbjct 38564 CAGATCTTCGTGAAAACGTTGACTGGAAAGACTATCACTCTTGAAGTTGAAGCCTCTGAT 38505 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || || ||||| || ||||| ||||| || || ||||| ||||||||||| Sbjct 38504 ACCATTGAAAATGTCAAGGCTAAAATTCAAGACAAGGAGGGTATCCCGCCGGACCAGCAG 38445 Query 178044 CG 178045 || Sbjct 38444 CG 38443 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || ||||| || ||||| || || || || ||| ||| Sbjct 38025 CAAATTTTTGTTAAGACTTTGACCGGAAAGACCATCACTCTTGAAGTAGAGGCCTCGGAC 37966 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || || |||||||||||||| || || || || |||||||| Sbjct 37965 ACGATTGAAAACGTGAAGGCCAAAATTCAGGACAAAGAGGGGATTCCGCCAGACCAGCAG 37906 Query 178044 CGACTT 178049 || ||| Sbjct 37905 CGTCTT 37900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203677991319300