Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20hapla_20[genbank_20GCA_5F000172435.1_202008-09-29] 3,450 sequences; 53,012,960 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2352 86.0 6e-12 >seq2352 Length=49960 Score = 86.0 bits (94), Expect = 6e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| |||||||| |||| ||| || ||| ||||||||| ||||| ||||| | | Sbjct 37487 CCACCGCGAAGACGTAAGACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCG 37546 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGG 41737 || || || | || || ||||||||||| ||||| ||| || Sbjct 37547 AGAGTTCGACCATCCTCAAGCTGCTTGCCAGCGAAGATCTGG 37588 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || |||||||| || ||||| || || |||||| ||||||||||| || | Sbjct 37758 CCTCCACGAAGACGTAAAACAAGATGGAGTGTAGACTCCTTTTGAATGTTATAATCTGCA 37817 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || ||||| |||| || ||||||||||| ||||||||| Sbjct 37818 AGAGTGCGACCGTCTTCAAGCTGCTTGCCAGCGAATATC 37856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462284063140000