Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq137 89.7 1e-12 seq114 89.7 1e-12 >seq137 Length=120519 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 9288 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 9347 Query 165769 CCCC 165772 |||| Sbjct 9348 CCCC 9351 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 11541 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 11482 Query 165770 CCC 165772 ||| Sbjct 11481 CCC 11479 >seq114 Length=126689 Score = 89.7 bits (98), Expect = 1e-12 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| |||||||||||||||||| ||||||| |||||||||| |||| ||||||||| Sbjct 53351 TGCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAG 53292 Query 165769 CCCC 165772 |||| Sbjct 53291 CCCC 53288 Score = 87.8 bits (96), Expect = 4e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| |||||||||||||||||| ||||||| |||||||||| |||| |||||||||| Sbjct 51260 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGTTGTCGCGGGTTCGAGC 51319 Query 165770 CCC 165772 ||| Sbjct 51320 CCC 51322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057660126203330