Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq47 86.0 6e-12 seq668 84.2 2e-11 >seq47 Length=171977 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 16198 TAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGT 16257 |||||| || || || | ||| |||||||| |||| || | ||| || || Sbjct 33732 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 33791 Query 16258 TAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAA 16317 | || ||||| | || |||||||||| ||| || || |||||||| || || || Sbjct 33792 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 33851 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATT 16377 ||||||||||||||| | |||||||| || | ||||| | | | ||| |||||| | Sbjct 33852 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 33911 Query 16378 ACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATC 16422 | | |||| | |||| || ||||||| || ||| |||| Sbjct 33912 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATC 33956 >seq668 Length=57742 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| || || |||||||| || || ||||||||||||||||| Sbjct 38636 CCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAAGAATATACCCTCAACT 38577 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGT 16393 | |||||||| || | ||||| | | | ||| |||||| || | |||| | Sbjct 38576 GCGGCAAAAGCAATAAGACGTTCACCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGA 38517 Query 16394 ACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTT 16449 |||| || ||||||| || ||| |||| | | ||| || |||||||| || Sbjct 38516 GCCCAATCAGCTTTTTTCTTGATAAAATCAAACTCGAATATAGCATTAAACAACTT 38461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511337106106120