Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq668 96.9 4e-15 seq47 91.5 2e-13 seq9361 84.2 2e-11 seq4192 84.2 2e-11 seq3181 84.2 2e-11 seq107 84.2 2e-11 seq95 84.2 2e-11 >seq668 Length=57742 Score = 96.9 bits (106), Expect = 4e-15 Identities = 161/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 38495 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 38554 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | ||||| || || ||||| || || | Sbjct 38555 AACGTCTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 38614 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| | ||||| || ||||| || || || | || | Sbjct 38615 TTTTTTGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTT 38674 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||||| || ||| | |||||| Sbjct 38675 CTCGTGATGAAGGACTTCATCGAGATTTTGCTTGTTTACTTTTCCAACATTTG 38727 >seq47 Length=171977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 116976 TCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCG 117035 |||| | || || || ||||| || || |||| || | | ||| || | || || | Sbjct 33949 TCAAGAAAAAAGCTGATTGGGCTCTTCGTTGGACTGCTAGTAAAGAAGCTTCATTTGGTG 33890 Query 117036 AGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCA 117095 | || || | || || || || || ||||| | ||||| || || ||||| || || | Sbjct 33889 AACGTCTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAA 33830 Query 117096 TATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCT 117155 | |||||||| ||||||||||| ||||| || ||||| || || || | || | Sbjct 33829 TTTTTTGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTT 33770 Query 117156 CCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTG 117208 | | || || || || ||| | || ||||| ||| | || ||| |||||||| Sbjct 33769 CTCGAGATGAAGGACTTCATCGAGATTTTGCTTGTCTACTTTTCCAGCATTTG 33717 >seq9361 Length=2893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 1754 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 1813 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| |||||| |||| ||| Sbjct 1814 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 1873 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | ||||||||| Sbjct 1874 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCCGACTACAAT 1933 Query 40870 ATCCAG 40875 || ||| Sbjct 1934 ATTCAG 1939 >seq4192 Length=9737 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 1175 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 1116 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 1115 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 1056 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 1055 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 996 Query 40870 ATCCAG 40875 || ||| Sbjct 995 ATTCAG 990 >seq3181 Length=14077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 6459 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 6400 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||||| || || | || || ||||| |||||| |||| ||| Sbjct 6399 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 6340 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | |||||||| Sbjct 6339 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCAGACTACAAT 6280 Query 40870 ATCCAG 40875 || ||| Sbjct 6279 ATTCAG 6274 >seq107 Length=131503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 116203 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 116262 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| |||||| |||| ||| Sbjct 116263 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 116322 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || ||| |||| || | || || | |||||||| Sbjct 116323 CAACGTCTCATCTTCGCAGGGAAGCAGTTGGAGGATGGTCGTACGTTGGCTGACTACAAT 116382 Query 40870 ATCCAG 40875 || ||| Sbjct 116383 ATTCAG 116388 >seq95 Length=138503 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||| | || || ||||||||||| || || || |||||| | || || || | Sbjct 6319 ATGCAAGTCTTTGTCAAAACGCTCACAGGGAAGACGATCACCTTGGATGTGGAGCAGTCG 6260 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || ||||| |||||| |||| ||| Sbjct 6259 GACACCATCGAGAATGTCAAGGCCAAGATCCAGGAGAAGGAGGGGATCCCCCCGGAGCAG 6200 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| ||||||| ||| || || || |||| || | || || | ||||||||| Sbjct 6199 CAACGTCTCATCTTCGCAGGGAAGCAATTGGAGGATGGTCGTACGTTGGCCGACTACAAT 6140 Query 40870 ATCCAG 40875 || ||| Sbjct 6139 ATTCAG 6134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515141331058160