Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1361 86.0 5e-12 seq1136 86.0 5e-12 seq696 84.2 2e-11 seq32 84.2 2e-11 >seq1361 Length=35035 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 ||||||||||| ||||| ||||| ||||||||| ||||||| || || | ||||| | Sbjct 30291 CGCTGCTGATCAGGAGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 30350 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 || || | |||||| || | || | |||||| || || ||||| || || || ||| Sbjct 30351 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTGACGAAGATC 30410 Query 118734 TGCAT 118738 ||||| Sbjct 30411 TGCAT 30415 >seq1136 Length=40351 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 ||||||||||| || || ||||| ||||||||| ||||||| || || | ||||| | Sbjct 26743 CGCTGCTGATCAGGCGGAATGCCTTCCTTGTCTTGAATTTTTGCCTTCACATTTTCGATG 26802 Query 118674 GTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 118733 || || | |||||| || | || | |||||| || || ||||| ||||| || ||| Sbjct 26803 GTATCAGAAGCCTCGACTTCAAGAGTGATCGTTTTTCCAGTAAGAGTCTTTACGAAGATC 26862 Query 118734 TGCAT 118738 ||||| Sbjct 26863 TGCAT 26867 >seq696 Length=56493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 |||||| ||||| || || || ||||| || ||| ||||||| ||||| | || | Sbjct 4014 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 3955 Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||| || | ||| ||||||| || | ||||| ||||| ||||| ||||||||||| Sbjct 3954 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 3895 Query 118733 CTGCAT 118738 |||||| Sbjct 3894 CTGCAT 3889 >seq32 Length=201840 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 118613 ACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGAC 118672 |||||| ||||| || || || ||||| || ||| ||||||| ||||| | || | Sbjct 46650 ACGCTGTTGATCAGGCGGGATACCCTCTTTATCTTGAATTTTTGCCTTAACATTCTCAAT 46709 Query 118673 GGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 ||| || | ||| ||||||| || | ||||| ||||| ||||| ||||||||||| Sbjct 46710 GGTATCAGAAGCCTCAACCTCGAGAGTAATAGTTTTTCCGGTGAGAGTCTTTACAAAAAT 46769 Query 118733 CTGCAT 118738 |||||| Sbjct 46770 CTGCAT 46775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433766471158972