Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq668 113 4e-20 seq47 100 3e-16 >seq668 Length=57742 Score = 113 bits (124), Expect = 4e-20 Identities = 284/438 (65%), Gaps = 39/438 (9%) Strand=Plus/Minus Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 || |||| || | || |||||||||||| | ||| | |||||| || | | ||||| Sbjct 38726 AAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAAATTAAT 38667 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||| || || ||||| | || ||||| || | |||||| || || ||| Sbjct 38666 TCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATTGCAGCA 38607 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || ||||| ||||||||||| |||||||||||||| |||| | || ||||| | Sbjct 38606 AAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCACCAAAT 38547 Query 16397 GTTCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTTC 16456 | | |||||| | |||| |||||||| ||||||| || | | | | Sbjct 38546 GAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAATCA 38487 Query 16457 ATGTTCTCTATTGCATTAAATAAAT---------------AAtttttttCTTT------- 16494 | | ||| |||||||| || | ||||||||| | Sbjct 38486 AACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCTAAAGAA 38427 Query 16495 ---------GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | |||| |||||||||||| |||| | ||||||||||| Sbjct 38426 GGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTG 38367 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||||||||| || || || || ||||| |||||||| || | |||||| | |||||| | Sbjct 38366 AATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTGGTATTTGAA 38307 Query 16599 CTTC-AGAGTAAAACCTT 16615 |||| ||| ||||| || Sbjct 38306 CTTCTTGAGCAAAACGTT 38289 >seq47 Length=171977 Score = 100 bits (110), Expect = 3e-16 Identities = 277/430 (64%), Gaps = 46/430 (11%) Strand=Plus/Plus Query 16231 TATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGT 16290 || |||||||||||| | ||| | |||||| || | | ||||| || || ||| Sbjct 33732 TAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAAATTAATTCATTACTTTGTGT 33791 Query 16291 AAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAA 16350 || || ||||| || ||||| || | |||||| || || ||||| ||||| || Sbjct 33792 CAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATTGCAGCAAAACTTCCAGAGAA 33851 Query 16351 GAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttact 16410 ||||||||| ||||| |||||||| |||| | || ||||| | | | |||||| Sbjct 33852 GAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCACCAAATGAAGCTTCTTTACT 33911 Query 16411 ttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTC-TATTG 16469 | |||| |||||||| ||||||| || | | | | || ||| ||| | Sbjct 33912 AGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATAAAAT-CAAATTCGAATATAG 33970 Query 16470 CATTAAATAA--------------------ATAAtttttttCTTT--------------- 16494 |||||||||| ||| ||||||| || Sbjct 33971 CATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTTAATTTAAAGAAGGAAATAC 34030 Query 16495 -GCT-------ATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 | | |||| |||||||||||| |||| | ||||||||||||||||||| Sbjct 34031 CGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACATTTCTGAATGAATA 34090 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGA 16605 || || || || || ||||| |||||||| || | ||| || | |||||| ||||| || Sbjct 34091 TTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTCTGGTATTTGAACTTCTTGA 34150 Query 16606 GTAAAACCTT 16615 | ||||| || Sbjct 34151 GCAAAACGTT 34160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462442097092600