Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq74 86.0 5e-12 seq10130 82.4 6e-11 seq583 82.4 6e-11 >seq74 Length=149414 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 || |||||||||||||| || |||||| | | ||||| ||||||| || ||||| ||| Sbjct 17173 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 17114 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||| ||||||| || | || || | || || || |||||||| || ||| Sbjct 17113 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCACATATTTATTCTACACAT 17054 Query 20617 ATAGAACCTTTAAAA 20631 ||||| |||||||| Sbjct 17053 TTAGAAGCTTTAAAA 17039 >seq10130 Length=2554 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 || |||||||||||||| || |||||| | | ||||| ||||||| || ||||| ||| Sbjct 1113 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTTACTCATATGATCGCTCATGTAACA 1172 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||| ||||||| || | || || | || || || |||||||| || ||| Sbjct 1173 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 1232 Query 20617 ATAGAACCTTTAAAA 20631 |||| |||||||| Sbjct 1233 TTAGAGGCTTTAAAA 1247 >seq583 Length=62644 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 20497 GGTGTTCCTTTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACA 20556 || |||||||||||||| || |||||| | | || || ||||||| || ||||| ||| Sbjct 48284 GGCGTTCCTTTCAATATAGCCAGTTATTCATTACTAACCCATATGATCGCTCATGTAACA 48225 Query 20557 GATTTAAAAACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCAT 20616 | | ||| ||||||| || | || || | || || || |||||||| || ||| Sbjct 48224 GGACTTAAAGCGGGTGAATTTATTCATACACTTGGTGATGCTCATATTTATTCTACACAT 48165 Query 20617 ATAGAACCTTTAAAA 20631 ||||| |||||||| Sbjct 48164 TTAGAAGCTTTAAAA 48150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399125176619995