Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq668 93.3 4e-14 seq47 91.5 1e-13 >seq668 Length=57742 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 38560 CTTATTGCTTTTGCCGCAGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 38619 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| | ||||| || ||||| || || || || || || || Sbjct 38620 TGGCTAAAGAAACGCGGTTTTATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGT 38679 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTG 58123 || || || || ||| |||||||| || Sbjct 38680 GATGAAGGACTTCATCGAGATTTTGCTTG 38708 >seq47 Length=171977 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || || || || ||||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 33884 CTCATTGCTTTTGCCGCGGTTGAGGGTATATTCTTCTCTGGAAGTTTTGCTGCAATTTTT 33825 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| | ||||||||||| ||||| || ||||| || || || || || || || Sbjct 33824 TGGCTAAAGAAACGCGGTTATATGCCTGGACTGACACAAAGTAATGAATTAATTTCTCGA 33765 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTA 58127 || || || || ||| |||||||| || ||| Sbjct 33764 GATGAAGGACTTCATCGAGATTTTGCTTGTCTA 33732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445699027980720