Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2388 114 2e-20 seq8961 100 4e-16 seq2136 100 4e-16 seq499 89.7 6e-13 >seq2388 Length=20594 Score = 114 bits (126), Expect = 2e-20 Identities = 200/290 (69%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| ||||||||||||| Sbjct 12439 TTATTTCCTCCCTGATCAATATAGCGTGCCACAGAATTAAAAACTTGCAACATTGGAATA 12498 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 12499 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 12555 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| || || || ||||| || ||| ||| ||||| | || || || |||| || Sbjct 12556 TGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAGATATAAGCACAACGATTTATTGTT 12615 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 12616 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 12675 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 12676 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 12725 Score = 102 bits (112), Expect = 1e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 13757 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 13816 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || |||| ||| || |||| | | ||||||| Sbjct 13817 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCTACTTCAGCCGCCAAATTATCCAATT 13876 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 13877 CAACAGTTGTTACTCCAGTATAAATGCCT 13905 Score = 86.0 bits (94), Expect = 8e-12 Identities = 146/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| |||||||| || || ||||| ||| | | |||||||| Sbjct 7895 GTACGCAAATAATACATTCCTGTCTTGAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 7954 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 7955 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 8014 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| ||||| |||| ||||||||||| |||| Sbjct 8015 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGCTGTGGAATTTCCCAAACAGTT 8074 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 8075 TTGTATAAAGCT---TTGATATCTTCTGG 8100 >seq8961 Length=3088 Score = 100 bits (110), Expect = 4e-16 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 2103 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 2162 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 2163 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 2219 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| || || || ||||| || ||| ||| || || | || || || || | || Sbjct 2220 TGAATAGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTT 2279 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 2280 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 2339 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 2340 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 2389 >seq2136 Length=23250 Score = 100 bits (110), Expect = 4e-16 Identities = 197/290 (68%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 63417 TTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATA 63476 || |||||||||||||| || || | || |||| ||||| |||||| |||||| Sbjct 8678 TTATTTCCTCCCTGATCAATATAGCGTGCCACCGAATTAAAAACTTGCAACATCGGAATA 8619 Query 63477 ATACCGTTTGATATACCATTGGTACCGGAGAT---ATAGCCTCCACTGGCACGAATATTA 63533 || || || || | ||||| || || ||||| | | ||| | |||||||| | Sbjct 8618 ATTCCATTCGAATTTCCATTTGTTCCAGAGATCAAAGAACCTGAA---GCACGAATTGAA 8562 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 ||| || || || ||||| || ||| ||| || || | || || || || | || Sbjct 8561 TGAATGGAAAGTCCAATTCCTCCAGCCGATTTTGAAATATAAGCACAACGATTAATTGTT 8502 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 ||| | || ||||| || ||| | | ||| ||| | |||||| ||| | ||| Sbjct 8501 TCAAAAATTCCTTCAATTGAATCGCCAACCATTGAAAGCAAAAAACAAGAAGAAAGTTGT 8442 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCA 63703 |||| | || ||||| || ||||| || ||||| ||||| |||||||| Sbjct 8441 GGACGTTTTGTACCCGCGTTGAATAAAGTTGGAGAGGCGTGAGTAAACCA 8392 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 64009 TAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGG 64068 |||| | ||||| ||||| ||||| |||||||| | || |||||||| || || | | Sbjct 7058 TAAAAACCTTTTTCGTTTCTTTGTGCAGATTTGAAACAGCAATTCTGGCAGCAAGCAAAG 6999 Query 64069 CATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATT 64128 ||||||| || || ||||||| | || || | ||| || |||| | | ||||||| Sbjct 6998 CATAATCTGGGTGAACTGTAGTATTTGAAGCAGCCACTTCAGCCGCCAAATTATCCAATT 6939 Query 64129 CTACCGTTGTTACTCCATTATATATTCCT 64157 | || |||||||||||| |||| || ||| Sbjct 6938 CAACAGTTGTTACTCCAGTATAAATGCCT 6910 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| |||||||||||||| ||||| ||| | | |||||||| Sbjct 13079 GTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGAG 13020 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 13019 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 12960 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| || || ||||| ||||||||||| |||| Sbjct 12959 AAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGAATTTCCCAAACAGTT 12900 Query 62256 TT--ATAAACTCGCTTA-ATATCTTCTGG 62281 || ||||| |||| ||||||||||| Sbjct 12899 TTGTATAAA---GCTTTGATATCTTCTGG 12874 >seq499 Length=68593 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/209 (70%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 ||||| | ||| |||||||| ||||| | ||| ||| | | |||||||| Sbjct 9397 GTACGCAAATAATACATTCCTGTTTTCAAACCATTTTCCCAAGCAAAGAAATGCATTGAG 9456 Query 62136 GTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATG 62195 || | ||| | ||| | ||||| || ||||| | ||| | |||||||||||| ||||| Sbjct 9457 GTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGATA 9516 Query 62196 AAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTT 62255 || | | | || | |||||||| ||||| ||||| ||||||||||| |||| Sbjct 9517 AAAGGAGCTCGATCAACTGCCATTTTAATGATTTCACGTTGTGGAATTTCCCAAACAGTT 9576 Query 62256 T--TATAAA-CTCGCTTAATATCTTCTGG 62281 | |||||| || || ||||||||||| Sbjct 9577 TTGTATAAAGCT---TTGATATCTTCTGG 9602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629722410942480