Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meloidogyne_20incognita_20[genbank_20GCA_5F900182535.1_202017-05-05] 12,091 sequences; 183,531,997 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq668 123 2e-23 seq47 114 1e-20 seq2388 113 4e-20 seq8961 91.5 1e-13 seq2136 91.5 1e-13 >seq668 Length=57742 Score = 123 bits (136), Expect = 2e-23 Identities = 313/477 (66%), Gaps = 43/477 (9%) Strand=Plus/Minus Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||||||| |||| ||| || || ||||| | ||| ||| ||| |||| || Sbjct 38791 CCTTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTAT 38732 Query 11607 GTAAT-AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 || | ||||||| || | |||||| |||||||| | ||| | ||||| || | | Sbjct 38731 -TATTCAAATGTTGGAAAAGTAAACAAGCAAAATCTCGATGAAGTCCTTCATCACGAGAA 38673 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 |||| ||||||| ||| | ||| ||||| || || ||||| |||| |||||| || Sbjct 38672 ATTAATTCATTACTTTGTGTCAGTCCAGGCATAAAACCGCGTTTCTTTAGCCAAAAAATT 38613 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 |||||||| ||||| |||||||| ||||| || || ||||| || | | | ||| Sbjct 38612 GCAGCAAAACTTCCAGAGAAGAATATACCCTCAACTGCGGCAAAAGCAATAAGACGTTCA 38553 Query 11786 CCATAT--ACCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACG 11842 ||| || | ||| || |||| |||| |||||||||||||| || || | Sbjct 38552 CCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATA 38493 Query 11843 CATTCCATTGTTTCTATAGCGTTAAA--------------TAAATGCATTTTT----TCT 11884 | || | |||||| ||||| |||| |||||| ||| Sbjct 38492 AAATCAAACTCGAATATAGCATTAAACAACTTTGAACTATTAAAAAAATTTTTTTAATCT 38433 Query 11885 ATA-------------TT-------ATCTCTTACATATGTATCTATTAATAAACTATACA 11924 | | || |||| | | ||| ||||| |||||| ||||| Sbjct 38432 AAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGAATACA 38373 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 ||||||||||||||||||| ||||| |||||||||||||| ||||| || || |||| Sbjct 38372 TTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCTTCTG 38316 >seq47 Length=171977 Score = 114 bits (126), Expect = 1e-20 Identities = 313/482 (65%), Gaps = 48/482 (10%) Strand=Plus/Plus Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||||||| |||| ||| || || ||||| | ||| ||| ||| |||| || Sbjct 33653 CCTTTTCAATATCAACAGCCTCTCGAATTATTTCCTCAATACGTTCATTATTTGGTTTAT 33712 Query 11607 GTAAT-AAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 || | ||||| | || | || ||| |||||||| | ||| | ||||| |||| | Sbjct 33713 -TATTCAAATGCTGGAAAAGTAGACAAGCAAAATCTCGATGAAGTCCTTCATCTCGAGAA 33771 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 |||| ||||||| ||| | ||| ||||| | || ||||| |||| |||||| || Sbjct 33772 ATTAATTCATTACTTTGTGTCAGTCCAGGCATATAACCGCGTTTCTTTAGCCAAAAAATT 33831 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 |||||||| ||||| |||||||| ||||| || || ||||| || | | | ||| Sbjct 33832 GCAGCAAAACTTCCAGAGAAGAATATACCCTCAACCGCGGCAAAAGCAATGAGACGTTCA 33891 Query 11786 CCATAT--ACCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA-- 11840 ||| || | ||| || |||| |||| |||||||||||||| || || | Sbjct 33892 CCAAATGAAGCTTCTTTACTAGCAGTCCAACGAAGAGCCCAATCAGCTTTTTTCTTGATA 33951 Query 11841 ----CGCATTCCATTGT----TTCTATAGC--------GTTAAATAAATGCATTTTTTCT 11884 | |||| | | | || ||| | ||||| ||| ||||||| | Sbjct 33952 AAATCAAATTCGAATATAGCATTAAATAACTTTGAACTATTAAAAAAAAATATTTTTTTT 34011 Query 11885 ATATT-------------------------ATCTCTTACATATGTATCTATTAATAAACT 11919 | || |||| | | ||| ||||| |||||| Sbjct 34012 AATTTAAAGAAGGAAATACCGTTCAATCGGATCTTTAATATAAGTATCAATTAATTTTGA 34071 Query 11920 ATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTC 11979 |||||||||||||||||||||||| ||||| |||||||||||||| ||||| || ||||| Sbjct 34072 ATACATTTCTGAATGAATATTTTCAATAGCAATTTGAAATCCATAAAAACAACGAGCCTC 34131 Query 11980 TG 11981 || Sbjct 34132 TG 34133 >seq2388 Length=20594 Score = 113 bits (124), Expect = 4e-20 Identities = 146/197 (74%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 37335 CATATCATATTGTAGAATACCTTTACTCG-CTGGAGAATCGTTATATGTCTCATAAGGTC 37393 ||||||| | || | ||| ||||| ||| | |||||| | ||||| |||||||| |||| Sbjct 9232 CATATCAAACTGCAAAATGCCTTT-CTCAACAGGAGAACCTTTATAAGTCTCATATGGTC 9290 Query 37394 CGTAAATT--TTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAA 37451 | ||||| | ||| | |||||| || ||| | ||| |||||||||||||||| || Sbjct 9291 C--AAATTGCTCAGCCAACTCGCAAGAAGCTTCCAATGCACCATAATATATTGTTTCAAA 9348 Query 37452 AATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAA 37511 ||||||| | ||||| ||| || | |||||| | || | | | | || || ||||| Sbjct 9349 AATTTGTTTGTTTAACTCTTTGGCCTGGTCGCTAACAAAAGGAAAACGCATCAAAATAAA 9408 Query 37512 CACATCAGCCAAACCCT 37528 |||| |||||||||| Sbjct 9409 AGCATCGGCCAAACCCT 9425 Score = 100 bits (110), Expect = 3e-16 Identities = 123/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 37689 CAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAAT 37748 ||||| ||| || | | |||||| |||| |||||| || | || ||| | ||| Sbjct 10525 CAACGCAATCGAAGCCAAATTACAAACAGAAACTTCTTCAGGCGAAGTATATTCAACAAT 10584 Query 37749 CTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATT 37808 || ||||| ||||| || |||||||||||||||| |||| || ||||| |||| Sbjct 10585 TTCAGTACAAAGATTTGAGCATTTAATTGTTCCCAAATTTTTTTGGTTTGATTTACTATT 10644 Query 37809 ACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 ||||| ||||||||| | ||||| || |||| |||||||||||| Sbjct 10645 ACAAGCATCTTTATAGACCATATAGGGAATTCCAGTTTCTATTTGAGC 10692 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 37137 AACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAAT 37196 ||| |||||||| ||||| | |||| | ||| ||||| || || || ||||| Sbjct 8605 AACTTGAAAATCGCCAGAAAGAACTCGACGACAATAAATATTCGATGTGTAAGGCTCAAT 8664 Query 37197 GGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAG 37256 ||||| || |||| | ||||| | ||| || || ||||||||||| || |||| ||| Sbjct 8665 AGACTCGTTGTTACCAAGAATTTGTGCTGTTGAAGCTGTAGGCATTGGAGCAATTAAAAG 8724 Query 37257 GCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATC 37316 || || | | ||| ||| |||||| ||| | | ||| |||||||||||||| Sbjct 8725 ACTGTTGCGGACACCAAATGTTGCAATTCTTTTTCTCAAAGCATCCCAATCCCATAAATT 8784 Query 37317 TGTTGG 37322 ||||| Sbjct 8785 AGTTGG 8790 >seq8961 Length=3088 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 37689 CAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAAT 37748 ||||| ||| || | | ||| || |||| |||||| || | || ||| | ||| Sbjct 78 CAACGCAATCGAAGCCAAATTGCAAACAGAAACTTCTTCAGGAGAAGTATATTCAACAAT 137 Query 37749 CTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATT 37808 || ||||| ||||| || |||||||||||||||| |||| || ||||| |||| Sbjct 138 TTCAGTACAAAGATTTGAGCATTTAATTGTTCCCAAATTTTTTTGGTTTGATTTACTATT 197 Query 37809 ACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 ||||| |||||| || | ||||| || |||| |||||||||||| Sbjct 198 ACAAGCATCTTTGTAGACCATATATGGAATTCCAGTTTCTATTTGAGC 245 >seq2136 Length=23250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 37689 CAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAAT 37748 ||||| ||| || | | ||| || |||| |||||| || | || ||| | ||| Sbjct 10587 CAACGCAATCGAAGCCAAATTGCAAACAGAAACTTCTTCAGGAGAAGTATATTCAACAAT 10528 Query 37749 CTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATT 37808 || ||||| ||||| || |||||||||||||||| |||| || ||||| |||| Sbjct 10527 TTCAGTACAAAGATTTGAGCATTTAATTGTTCCCAAATTTTTTTGGTTTGATTTACTATT 10468 Query 37809 ACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGC 37856 ||||| |||||| || | ||||| || |||| |||||||||||| Sbjct 10467 ACAAGCATCTTTGTAGACCATATATGGAATTCCAGTTTCTATTTGAGC 10420 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/237 (69%), Gaps = 9/237 (4%) Strand=Plus/Minus Query 36825 TGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAAAAATGCATACT 36884 ||| | || |||||||||||| ||||| || || | ||| | | |||||||| Sbjct 13080 TGTACGCAAATAATACATTCCCGTTTTCAGACCATTTTCCCAAGCAAAGAAATGCATTGA 13021 Query 36885 GGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGACTTTGATCTAT 36944 ||| | |||||| ||||| |||| | | |||| || | | ||||||||||| || || Sbjct 13020 GGTAATTTTTGCATATGTTGGATCAGCAATATGTAAATTTAAAGATTGACTTTGGTCGAT 12961 Query 36945 AAACGCACCTCTGTCGGCTGCCATTTCTAAAAT---ACATTTTTGAGATATCTCCCAAAC 37001 ||| | | ||| || ||||||||| | ||| || || | || || |||||||| Sbjct 12960 AAAAGGAGCTCGATCAACTGCCATTTTGATAATTTCACGTTGTGGA---ATTTCCCAAAC 12904 Query 37002 CGTTTTATATATTTGTTTTATATTATCTGGTAA---ATCTAAATGTTGAATAGAACC 37055 ||||| |||| ||| |||| ||||| || | | | || ||| | |||||| Sbjct 12903 AGTTTTGTATAAAGCTTTGATATCTTCTGGCAATCCAACAATATTTTGGACAGAACC 12847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468453988333040